PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_13524

Common Name

KK1_013939

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

GRAS

Protein Properties

Length: 527aa MW: 60559.2 Da PI: 5.5338

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_13524	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	92.1	8.7e-29	188	302	1	118
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l+++L+ cA+a++s++ + a++l++++++++sp gd +qRla+yf +AL+arl +s+ ++++ l++++t+ ++ ++a+++++ v+P+ k++ C.cajan_13524 188 LRTQLMLCAQAIASNSPSFARQLIEQIKQHSSPIGDDIQRLAHYFGNALEARLDGSGYQVFRVLSSKRTT---AKDMIKAYHVYVSVCPFEKLAIS 280 5789*************************************************999999999999888...99***************** PP GRAS 97 taNqaIleavegeervHiiDfd 118 +N+ I + ++ ++++HiiDf+ C.cajan_13524 281 FTNNSIFNRTQDKKTIHIIDFG 302 *******************8 PP
2	GRAS	199.3	2.3e-61	306	524	155	373
GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 +e+++etg+rLa+++e+++vpfefn+ +a+r++++++e+L+++++E +aVn+ ++ ++llde+v l+++rd+vL+l+k+ +P+++v++ + +++ C.cajan_13524 306 EERVHETGRRLASYCERFNVPFEFNA-IAQRWDTIRVEDLKIQTNEFVAVNCLFHFEHLLDETVVLNNPRDAVLRLIKKANPDIFVHSIVNGSYDV 400 7899********************.7**************************************************************** PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345 + F+ rf eal +ysalfd+l+++++re+ r + E+el grei+n+vaceg +r+er +t+++W+ r ++aG++p+pl+ k+ + +k l+ + C.cajan_13524 401 PFFVSRFREALFHYSALFDMLDTTVGREDPMRLMFEKELYGREIMNIVACEGCDRIERPQTYKQWQLRNMRAGLRPLPLDCKIIERVKNRLKDDGy 496 ****************************************************************************************9998 PP GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaW 373 + +++e + +++++ Wk+r L + S+W C.cajan_13524 497 NPSFNLEVDGNWMLQSWKGRVLHASSCW 524 999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.473	162	504	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-26	188	302	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.9E-59	306	524	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MLMEDDTEER YSMFQDSLAL QHTERELYEV IANNNPPPPP PPSYSSSSSS SSSSSSSTVL 60 HVHNYPSVES PDQSLSSVEQ GTRFLPNTNF FPSFTNPPNV VIKTEEEEEE DFVSRGRRIR 120 EREEYDLDGR SRKQSAAYVD ENDLPELFDK VLLNTGLGKG KPPNTPLYNE TILTSTFGGK 180 SEEEVVDLRT QLMLCAQAIA SNSPSFARQL IEQIKQHSSP IGDDIQRLAH YFGNALEARL 240 DGSGYQVFRV LSSKRTTAKD MIKAYHVYVS VCPFEKLAIS FTNNSIFNRT QDKKTIHIID 300 FGFRPEERVH ETGRRLASYC ERFNVPFEFN AIAQRWDTIR VEDLKIQTNE FVAVNCLFHF 360 EHLLDETVVL NNPRDAVLRL IKKANPDIFV HSIVNGSYDV PFFVSRFREA LFHYSALFDM 420 LDTTVGREDP MRLMFEKELY GREIMNIVAC EGCDRIERPQ TYKQWQLRNM RAGLRPLPLD 480 CKIIERVKNR LKDDGYNPSF NLEVDGNWML QSWKGRVLHA SSCWVPA

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MLMEDDTEER YSMFQDSLAL QHTERELYEV IANNNPPPPP PPSYSSSSSS SSSSSSSTVL  60
HVHNYPSVES PDQSLSSVEQ GTRFLPNTNF FPSFTNPPNV VIKTEEEEEE DFVSRGRRIR  120
EREEYDLDGR SRKQSAAYVD ENDLPELFDK VLLNTGLGKG KPPNTPLYNE TILTSTFGGK  180
SEEEVVDLRT QLMLCAQAIA SNSPSFARQL IEQIKQHSSP IGDDIQRLAH YFGNALEARL  240
DGSGYQVFRV LSSKRTTAKD MIKAYHVYVS VCPFEKLAIS FTNNSIFNRT QDKKTIHIID  300
FGFRPEERVH ETGRRLASYC ERFNVPFEFN AIAQRWDTIR VEDLKIQTNE FVAVNCLFHF  360
EHLLDETVVL NNPRDAVLRL IKKANPDIFV HSIVNGSYDV PFFVSRFREA LFHYSALFDM  420
LDTTVGREDP MRLMFEKELY GREIMNIVAC EGCDRIERPQ TYKQWQLRNM RAGLRPLPLD  480
CKIIERVKNR LKDDGYNPSF NLEVDGNWML QSWKGRVLHA SSCWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-33	180	526	11	380	Protein SCARECROW
5b3h_A	7e-33	180	526	10	379	Protein SCARECROW
5b3h_D	7e-33	180	526	10	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_13524

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020223216.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	1e-162	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A151SUS6	0.0	A0A151SUS6_CAJCA; Scarecrow-like protein 14
STRING	GLYMA15G04190.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-162	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]