PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13523
Common NameKK1_013938
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 531aa    MW: 59608.4 Da    PI: 6.4544
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13523genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS220.11.1e-672334531221
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL+ cA+avs++d++ a++lL++++++++p gd+ qRla+y++++L+arl++ ++++       + ++ + ++ l+a+++f  ++P+ kfsh+
  C.cajan_13523 233 LRTLLVLCAQAVSASDNRTANELLKQIRQHSTPLGDASQRLAHYVANGLEARLVGAGTGTQIF--YMSHKKFTAADYLKAYQVFISACPFKKFSHF 326
                    5789***************************************************65555432..222233459********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN++Il+ +e++e++HiiDf+i +G+QWp L++ L+sR++gp++lRiTg++ p++g   +e++eetg+rLak++e+++vpfe+n+++++++e+++
  C.cajan_13523 327 FANKMILKTAEKAETLHIIDFGILYGFQWPILIRFLSSRSGGPAKLRITGIEYPQAGfrPAERIEETGRRLAKYCERFNVPFEYNAIASRNWETIQ 422
                    ********************************************************9*****************************9999****** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsle 221
                    +e+L+++++E++aVn+ ++ ++lldes +++
  C.cajan_13523 423 IEDLKIQSNEVVAVNCLIRFKNLLDESIEVK 453
                    ************************9998765 PP
2GRAS51.22.4e-16454528299373
           GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    +ce  er+er e++++W++r ++aGFk++pl+++++++ +  l++ + + +  +e+ +++++gWk+r L++ S+W
  C.cajan_13523 454 TCEALERVERPESYKQWQARNTRAGFKQLPLDKEIMAKFRGKLKEWYHKDFVFDEDCNWMLQGWKGRILYASSCW 528
                    799********************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.146207531IPR005202Transcription factor GRAS
PfamPF035144.0E-65233453IPR005202Transcription factor GRAS
PfamPF035148.3E-14454528IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MEENFDQKPC MCYDPLTLQH TEKSFYDVLE LDPALPLSPN QHPLESPDGN SSNSTTDSAI  60
SQDLKPHSPD TPVSVSAAAD AFISSSLVPP HDLTGVNDGV LDLDSSAASK LMAENIFSDA  120
DSMLQFRRGL EEASKFLPQR PQLFTGKNHA RQDEEEGGRS NKQSAGCAEE ESEISEMFDR  180
VLLSVENVPL CAEHKSGPVA VGDGSTKSEQ THVFDGGKVR SKKQGKKKET VDLRTLLVLC  240
AQAVSASDNR TANELLKQIR QHSTPLGDAS QRLAHYVANG LEARLVGAGT GTQIFYMSHK  300
KFTAADYLKA YQVFISACPF KKFSHFFANK MILKTAEKAE TLHIIDFGIL YGFQWPILIR  360
FLSSRSGGPA KLRITGIEYP QAGFRPAERI EETGRRLAKY CERFNVPFEY NAIASRNWET  420
IQIEDLKIQS NEVVAVNCLI RFKNLLDESI EVKTCEALER VERPESYKQW QARNTRAGFK  480
QLPLDKEIMA KFRGKLKEWY HKDFVFDEDC NWMLQGWKGR ILYASSCWVP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-342164391219Protein SCARECROW
5b3h_D2e-342164391219Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13523
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223214.10.0scarecrow-like protein 34
SwissprotQ9XE581e-120SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A151SUR00.0A0A151SUR0_CAJCA; Scarecrow-like protein 14
STRINGXP_007150338.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-118SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]