PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13499
Common NameKK1_013790, KK1_013911
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 411aa    MW: 44936.3 Da    PI: 8.4028
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13499genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-057193123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C++C+k F r  nL+ H r H
  C.cajan_13499 71 FICEICNKGFQRDQNLQLHRRGH 93
                   89*******************88 PP
2zf-C2H212.40.00046147169123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  C.cajan_13499 147 WKCDKCSKKYAVQSDWKAHSKTC 169
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-67093No hitNo description
Gene3DG3DSA:3.30.160.601.0E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.7E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0227193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8457193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355240112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-6142167No hitNo description
SMARTSM00355150147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSNLTCASGE ASASSGNRTE IGTDYSQQYF APPTTQTQPP LKKKRNLPGN PDPEAEVVAL  60
SPKTLLATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSKEIRKK VYVCPEVTCV  120
HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAE ESGRSVAGTG TGIGLGIGNS SETPEAAHAG MMISSASATH  240
DEDIFHGLKE EQQSLMAPWV GAPSSSFFSP HENPNPRGGP TLPHMSATAL LQKAAEMGAT  300
MSLTRTHQQQ QQAHVCTNAA LDLSSREDQM TPTLLHHVIN SFSSPFQGTS FDHTFGGCAP  360
KTTTAHAAGN NNSEALTRDF LGLTSLSHND FLNIAAMGNC INNQTQNPWQ G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34143204364Zinc finger protein JACKDAW
5b3h_F1e-34143204364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197109KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13499
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1489181e-109AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223862.10.0protein indeterminate-domain 11
RefseqXP_020224294.10.0protein indeterminate-domain 11
SwissprotQ8H1F51e-126IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A151SUQ90.0A0A151SUQ9_CAJCA; Zinc finger protein MAGPIE
STRINGGLYMA15G02840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-118indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]