PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13329
Common NameKK1_013737
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 710aa    MW: 78054.4 Da    PI: 6.1813
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13329genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.4e-2057112156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    ++  +++t+ q+ee+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  C.cajan_13329  57 KKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 112
                    5778899**********************************************999 PP
2START208.13.3e-652344541206
                    HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
          START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                    ela +a++el ++a+a++p+Wv      es+n+de+l++f++ +        ++ea+r+s+vv+m++ +l  +l+d++ qW++ +     +a tle
  C.cajan_13329 234 ELAVAAMEELTRLAQAGDPLWVPNNhqsESLNEDEYLRTFPTRGLgpkplgLRSEASRESVVVIMNHINLIDILMDVN-QWSTVFCgivsRALTLE 328
                    57899*****************999999************88766*********************************.******99999****** PP

                    EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
          START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                    v+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g w++vdvS+ds ++ +    + R++++pSg+li++++ng+skvtw+ehv++
  C.cajan_13329 329 VLSTGvagnynGALQVMSAEFQVPSPLVPtRENYFVRYCKQHPDGIWAVVDVSLDSLRPST----ISRSRRRPSGCLIQELPNGYSKVTWIEHVEV 420
                    ***********************************************************88....79***************************** PP

                    -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                    ++r +h+++++lv+sgla+gak+wvatl+rqce+
  C.cajan_13329 421 DDRAVHSIYKPLVNSGLAFGAKRWVATLDRQCER 454
                    ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1941114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2142112IPR009057Homeodomain-like
PROSITE profilePS5007116.68254114IPR001356Homeobox domain
SMARTSM003891.8E-1856118IPR001356Homeobox domain
PfamPF000461.9E-1757112IPR001356Homeobox domain
CDDcd000862.63E-1857115No hitNo description
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PROSITE profilePS5084845.456225457IPR002913START domain
SuperFamilySSF559611.65E-36226456No hitNo description
CDDcd088753.29E-124229453No hitNo description
SMARTSM002342.6E-67234454IPR002913START domain
PfamPF018528.9E-55235454IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-5336454IPR023393START-like domain
SuperFamilySSF559611.79E-24474704No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MFHTSLFDSH HPHNLMTTCS ESDLGKARDD EYETKSGTDT MDVPSGDDQD PNPRPKKKGY  60
RRHTQRQIEE MEAFFKQCPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKTQHERNEN  120
AILKAENEKL RAENNRYKEA LTNASCPNCG GPAALGEMSF DEQHLRIENA RLREEIDRIS  180
GIASKYVGKP VTSSYSNLSP MNNNHMHVGE MYGGSDLLRS LPAPADADKP MIVELAVAAM  240
EELTRLAQAG DPLWVPNNHQ SESLNEDEYL RTFPTRGLGP KPLGLRSEAS RESVVVIMNH  300
INLIDILMDV NQWSTVFCGI VSRALTLEVL STGVAGNYNG ALQVMSAEFQ VPSPLVPTRE  360
NYFVRYCKQH PDGIWAVVDV SLDSLRPSTI SRSRRRPSGC LIQELPNGYS KVTWIEHVEV  420
DDRAVHSIYK PLVNSGLAFG AKRWVATLDR QCERLASSMA KNIPAGDLCV ITSPEGRKSM  480
LKLAERMVIS YCTGVGASTA HAWTTLSATG CDDVRVMTRK SADDPGRPPG IVLSAATSFW  540
LPVPPKRLFD FLRDENSRNE WDILSNGGLV QELAHIANGR DPGNCVSLLR VNSANSSQSN  600
MLILQESSTD STGSYVVYAP VDIVAMNVVL SGGDPDYVAL LPSGFAILPD GPGLNEGPIL  660
DVGSGGSLLT VAFQILVDSA PTAKLSLGSV ATVNSLIKCT VERIKVAVSQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13329
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-90AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217012.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020217013.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A151TK600.0A0A151TK60_CAJCA; Homeobox-leucine zipper protein MERISTEM L1
STRINGGLYMA11G00570.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]