PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_13296 | ||||||||
Common Name | KK1_013704 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 31623.5 Da PI: 9.7827 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 110 | 160 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge C.cajan_13296 110 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 160 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.08E-16 | 109 | 169 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-22 | 110 | 167 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-35 | 110 | 173 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-31 | 110 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.301 | 110 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 111 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-13 | 111 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MLELKDGTDI GSCLSKLILT SGTNTLDSIF SNCPTNGTSS NNSVLESFGY EALGSSVYLR 60 QRDILQKFYQ ESRGSGSYVG SWSSFRNGVY TNTNTNTNTN TNPIPCKKKL YRGVRQRHWG 120 KWVAEIRLPQ NRMRVWLGTY DTAEAAAYAY DRAAYKLRGE YARLNFPNLK DPTQLGLGDS 180 SRLKALKSSV DAKIQAICQK VKRERAKKSA AKKLNSDSHK TNTCSASSSS PSPFDWANHL 240 FSPSVSHDAI WKGENSTHPT EFQPCSLARL PSFDPDLIWE VLAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 107 | 167 | 2 | 63 | ATERF1 |
3gcc_A | 4e-20 | 107 | 167 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_13296 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031069 | 1e-113 | KT031069.1 Glycine max clone HN_CCL_187 AP2-EREBP transcription factor (Glyma01g43450.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020216061.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 2e-64 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A151TK53 | 0.0 | A0A151TK53_CAJCA; Ethylene-responsive transcription factor ERF061 family | ||||
STRING | GLYMA01G43450.1 | 1e-120 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 3e-56 | ERF family protein |
Publications ? help Back to Top | |||
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