PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13183
Common NameKK1_013588
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 465aa    MW: 53158.5 Da    PI: 8.7723
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13183genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.61.9e-205498348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rWT+eEd ll+d vk++ g++Wk+Ia++++ gRt+ qc +rwqk+l
    C.cajan_13183 54 RWTAEEDNLLIDTVKKHNGRNWKKIAAYLP-GRTDVQCLHRWQKVL 98
                     9*****************************.************986 PP
2Myb_DNA-binding55.91e-17104150148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ l+++vk++G ++W+ I+++++ gR +k c++rw+++l
    C.cajan_13183 104 KGSWTKEEDDCLIELVKKYGIKRWSVISKYLP-GRIGKGCRERWNNHL 150
                      799*****************************.*************97 PP
3Myb_DNA-binding55.41.4e-17156198145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+++l+ +++ +G++ W+ Iar ++ gRt++ +k++w+
    C.cajan_13183 156 KDAWTEEEEQILAYCHQIYGTK-WSEIARLLP-GRTDNAIKNHWN 198
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.7894798IPR017930Myb domain
SuperFamilySSF466891.99E-1951112IPR009057Homeodomain-like
SMARTSM007174.3E-1651100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2454109IPR009057Homeodomain-like
CDDcd001671.82E-145498No hitNo description
PfamPF002491.5E-175498IPR001005SANT/Myb domain
PROSITE profilePS5129429.09999154IPR017930Myb domain
SuperFamilySSF466893.91E-31101197IPR009057Homeodomain-like
SMARTSM007171.7E-16103152IPR001005SANT/Myb domain
PfamPF002491.2E-16104150IPR001005SANT/Myb domain
CDDcd001678.79E-15106150No hitNo description
Gene3DG3DSA:1.10.10.609.7E-27110157IPR009057Homeodomain-like
PROSITE profilePS5129419.76155205IPR017930Myb domain
SMARTSM007175.5E-16155203IPR001005SANT/Myb domain
PfamPF002498.9E-15156198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-21158205IPR009057Homeodomain-like
CDDcd001678.10E-12158198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MLEIKKELMD FNFDSPHPDG LHLCRLSSLN YRNSNTFLLE STPSASRKKA QSRRWTAEED  60
NLLIDTVKKH NGRNWKKIAA YLPGRTDVQC LHRWQKVLNP NLVKGSWTKE EDDCLIELVK  120
KYGIKRWSVI SKYLPGRIGK GCRERWNNHL DPAIKKDAWT EEEEQILAYC HQIYGTKWSE  180
IARLLPGRTD NAIKNHWNCS MKKKLDASPF GCDINATTSS FIASQIKPAH VLVKVESQTF  240
NEMRSVDNFP TKLILQNTPV EESFSEENCF EGETPKASRQ DMLASNLDYL PLASTVTYEA  300
CKSRKRQMVS FSDAKYNLGE KKGQEGWGSN NKINSMRLAD DIRNEYAYFP VEHPPVEDLV  360
LPTVFSGCLS PKTHMACADN NGCTPPSSIL RNYIGDISPE TVLRSLAMTY QNVPSIIRKR  420
TPWKATYRDS HQKPSRVIVC TPETERVTTG LDNLELNKGF ISFLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-67542058159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-67542058159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13183
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217686.10.0myb-related protein B isoform X2
TrEMBLA0A151TJN50.0A0A151TJN5_CAJCA; Myb-related protein 3R-1
STRINGGLYMA01G42650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-75myb domain protein 3r-5