PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13182
Common NameKK1_013587
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 352aa    MW: 38389.5 Da    PI: 5.0132
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13182genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35251152101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++ ++lisw+e+g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g++ ll++i
  C.cajan_13182  25 FLTKTYQLVDDPAADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGERGLLRDI 111
                    9*****************************************************************99.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  C.cajan_13182 112 QRRK 115
                    **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-3814108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.7E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.9E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.7E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1708.4E-4182207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAPLPAEQTG ESAPSDSQRS IPTPFLTKTY QLVDDPAADD LISWNEDGTS FIVWRPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDCF RRGERGLLRD IQRRKILPAP  120
AAAAVTTANA VTVAVAAPAV RTVSPTTSGD EQVLSSNSSP IGGSGNNNNT VHRTTSCTTA  180
PELLEENERL RKENMQLSHE LGQLKGLCNN ILSLMTNYAS GFSRQQLESS TSAARTMPVP  240
EGKALDLLPA KHVSSAEDAL HVAAAAPFAT PNAEVPKLFG VSIGLKRCRT ECDNEPEGEG  300
QNQTQTHTHT RLQTQSQSQS SQEPDGGSDV KSEPLDGDDS DDQDPRWLEL GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-271011419129Heat shock factor protein 1
5d5v_B7e-271011419129Heat shock factor protein 1
5d5v_D7e-271011419129Heat shock factor protein 1
5hdg_A6e-272511410110Heat shock factor protein 1
5hdn_A6e-272511410110Heat shock factor protein 1
5hdn_B6e-272511410110Heat shock factor protein 1
5hdn_C6e-272511410110Heat shock factor protein 1
5hdn_D6e-272511410110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13182
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218049.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-102HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A151TJN30.0A0A151TJN3_CAJCA; Heat stress transcription factor B-2b
STRINGGLYMA11G02800.10.0(Glycine max)
STRINGXP_007158472.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-81HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]