PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12975
Common NameKK1_013376
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LSD
Protein Properties Length: 145aa    MW: 15272 Da    PI: 7.6978
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12975genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.21.2e-123054125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   C+ Cr+lL YP GA+sV+Ca+C++V
  C.cajan_12975 30 CSWCRNLLLYPVGATSVCCAVCNAV 54
                   999*********************9 PP
2zf-LSD144.62.4e-146993125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   CggC+t L+Y rGA+sV+C++C+t+
  C.cajan_12975 69 CGGCHTFLMYIRGATSVQCSCCHTI 93
                   ***********************97 PP
3zf-LSD137.24.7e-12107131125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+C+ lL+Y +GA+sV+Ca+C +V
  C.cajan_12975 107 CGNCKMLLMYQYGARSVKCAVCSFV 131
                    **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.9E-112757IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-93054IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.108.7E-444128No hitNo description
TIGRFAMsTIGR010532.1E-146695IPR005735Zinc finger, LSD1-type
PfamPF069434.6E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.8E-10104133IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-11107131IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MPVPLAPYPT PLPPAPYAPP PNGAQSQLVC SWCRNLLLYP VGATSVCCAV CNAVTTVPPP  60
GIEMAQLVCG GCHTFLMYIR GATSVQCSCC HTINLALEAN QVAHVNCGNC KMLLMYQYGA  120
RSVKCAVCSF VTSVEVSTIS CLSTL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12975
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1345521e-126BT134552.1 Lotus japonicus clone JCVI-FLLj-17J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218239.17e-96protein LOL1 isoform X1
SwissprotQ93ZB11e-71LOL1_ARATH; Protein LOL1
TrEMBLA0A151TJ896e-99A0A151TJ89_CAJCA; Uncharacterized protein
STRINGcassava4.1_018557m6e-82(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-60lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]