PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_12924 | ||||||||
Common Name | KK1_013323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 131aa MW: 13725.6 Da PI: 4.5757 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 73 | 9.4e-23 | 1 | 57 | 24 | 83 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 ++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a + ss+ +++ C.cajan_12924 1 MPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAAPV---SSVAASA 57 899***************************************88888444...2222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.4E-18 | 1 | 61 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 20.211 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MPPLCAARIF QLTRELGHRS DGETIEWLLR HAEPSIIAAT GTGTVPAAPV SSVAASAPSA 60 EPSVACPLTA VAAHGMFAVP PPQPSCRLDL CPPPVMEFAA ANGYRHMPFT ALLLQPTAAE 120 DNQNDESLSE Q |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_12924 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020217985.1 | 2e-91 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 8e-32 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A151TIW7 | 3e-89 | A0A151TIW7_CAJCA; Transcription factor TCP11 | ||||
STRING | GLYMA13G20710.2 | 4e-73 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 4e-26 | TCP family protein |