PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12836
Common NameKK1_013228
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SRS
Protein Properties Length: 307aa    MW: 33368.6 Da    PI: 6.6109
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12836genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.16.5e-70982472154
         DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                    +sg++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa++rrerqqqla +++++++ + + + +r+r+   +++s l++t+l+s+ s+
  C.cajan_12836  98 ASGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLAVLQQQQQTLEPSGDRHRERD---HNSSPLACTRLPSNPSP 190
                    57899****************************************************9988877666666666665...588899*********** PP

         DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                    + le  ++P+ v+s+a frcvrvssvdd+eee+aY tav+igGhvf+GiLyd+G+e+
  C.cajan_12836 191 SGLEEMNFPAVVRSSADFRCVRVSSVDDAEEEYAYSTAVNIGGHVFRGILYDYGPES 247
                    *******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.0E-65101246IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.9E-28103145IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.7E-25198245IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAGLFSLGGR GNNNNNGQEE IPPPPDTLFW YNKNEDISSY RGGGSGLELW NQQQQQQQQQ  60
LVGQPRPLFH QDLYSALGVG SSRPISDDQS SSRSGFMASG GISCQDCGNQ AKKDCPHMRC  120
RTCCKSRGFD CQTHVKSTWV PASRRRERQQ QLAVLQQQQQ TLEPSGDRHR ERDHNSSPLA  180
CTRLPSNPSP SGLEEMNFPA VVRSSADFRC VRVSSVDDAE EEYAYSTAVN IGGHVFRGIL  240
YDYGPESNTN YMGGGESSSA GVGGLNLTSG TVVSGALVDP SSSMYSAPLN TFMPGSSGTQ  300
FFPHPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12836
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216086.10.0protein SHI RELATED SEQUENCE 1 isoform X1
SwissprotQ9SD406e-74SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A151TIN20.0A0A151TIN2_CAJCA; Uncharacterized protein
STRINGXP_007158606.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-59Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]