PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12769
Common NameKK1_013161
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 289aa    MW: 32419.5 Da    PI: 9.7724
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12769genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.4e-34101232101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT..TEEE---SSBTTTT............X..TTSEEE CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY..gFkkvkdeekksks............k..ekiweF 81 
                    Fl+k+y++++d++++e+iswse+g++fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+Y   F++ + + +  ++            k   + weF
  C.cajan_12769  10 FLTKTYQLVDDPSTDEVISWSESGDTFVVWKNADFAKDLLPNYFKHNNFSSFVRQLNTYfgSFSSFHVNYT--NDyitistikqgfrKivLDKWEF 103
                    9**********************************************************433444433333..3356777877666516699**** PP

                    EESXXXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  82 khksFkkgkkellekikrkk 101
                    ++++Fk+g+kell+kikr+k
  C.cajan_12769 104 ANENFKRGNKELLSKIKRRK 123
                    ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-496122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-367122IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.26E-297122IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-161033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-2910122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-164860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-166173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.3703.5E-4174206IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLQRSVPAPF LTKTYQLVDD PSTDEVISWS ESGDTFVVWK NADFAKDLLP NYFKHNNFSS  60
FVRQLNTYFG SFSSFHVNYT NDYITISTIK QGFRKIVLDK WEFANENFKR GNKELLSKIK  120
RRKIVPQPPA NPSEAGNGNS PSNSRGEEAG STSTSPSSCS GSKNPGSMDT TASRELWSKN  180
EKLKKDNKTL SCELARARKQ CDKLVTFLRD RLMVGPDQID DIMRRGCEDA VGEGGGGDYL  240
KLFGVWLKKD MLTDKPSNGH NKRGREDQMG FAGPRLNDFG AVKVIMKSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23512225129Heat shock factor protein 1
5d5v_B3e-23512225129Heat shock factor protein 1
5d5v_D3e-23512225129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12769
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217754.10.0heat shock factor protein HSF24
SwissprotP223354e-76HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A151TIG70.0A0A151TIG7_CAJCA; Heat shock factor protein HSF24
STRINGGLYMA01G39260.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-64heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]