PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12691
Common NameKK1_013082
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ZF-HD
Protein Properties Length: 300aa    MW: 33688.3 Da    PI: 8.4025
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12691genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.24.1e-33119174460
    ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                    +rY+eCl+NhAas+G+h+vDGCgEfm+s geegt+++l+CaAC+CHRnFHR+eve e
  C.cajan_12691 119 IRYRECLRNHAASMGSHVVDGCGEFMAS-GEEGTPESLRCAACECHRNFHRKEVEGE 174
                    79*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-30119171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-20120173IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.4E-30120171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.346121170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-27224297IPR009057Homeodomain-like
SuperFamilySSF466895.48E-17230296IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-26235292IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
METRGQDKEI EIPTTTTLGY SSSSSSSKLS SSTLGERSSS DHDQHHQTPH QPHTLISPHH  60
NLYPPPQPPS LAPPQPHHRP TSDPDLTTPI APTSNPSRTT PQTITTITTA TATTSSQLIR  120
YRECLRNHAA SMGSHVVDGC GEFMASGEEG TPESLRCAAC ECHRNFHRKE VEGELSQPQP  180
QSQLQPPPQP QHVPNYHHNY YTNKHNGPAE SSSEDLNMFQ SNTGAQVSVQ APLSKKRFRT  240
KFSQQQKDRM MEFADKIGWK IQKHNDQEVQ QFCSQVGVKR QVFKVWMHNN KQTTSKKQQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-212342931675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12691
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958113e-80BT095811.1 Soybean clone JCVI-FLGm-19N6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218132.11e-159zinc-finger homeodomain protein 6
SwissprotQ9ZPW72e-62ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A151TIB40.0A0A151TIB4_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGGLYMA11G07360.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-59homeobox protein 24