PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_12691 | ||||||||
Common Name | KK1_013082 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 300aa MW: 33688.3 Da PI: 8.4025 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.2 | 4.1e-33 | 119 | 174 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +rY+eCl+NhAas+G+h+vDGCgEfm+s geegt+++l+CaAC+CHRnFHR+eve e C.cajan_12691 119 IRYRECLRNHAASMGSHVVDGCGEFMAS-GEEGTPESLRCAACECHRNFHRKEVEGE 174 79*************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.3E-30 | 119 | 171 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-20 | 120 | 173 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.4E-30 | 120 | 171 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.346 | 121 | 170 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 224 | 297 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.48E-17 | 230 | 296 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-26 | 235 | 292 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
METRGQDKEI EIPTTTTLGY SSSSSSSKLS SSTLGERSSS DHDQHHQTPH QPHTLISPHH 60 NLYPPPQPPS LAPPQPHHRP TSDPDLTTPI APTSNPSRTT PQTITTITTA TATTSSQLIR 120 YRECLRNHAA SMGSHVVDGC GEFMASGEEG TPESLRCAAC ECHRNFHRKE VEGELSQPQP 180 QSQLQPPPQP QHVPNYHHNY YTNKHNGPAE SSSEDLNMFQ SNTGAQVSVQ APLSKKRFRT 240 KFSQQQKDRM MEFADKIGWK IQKHNDQEVQ QFCSQVGVKR QVFKVWMHNN KQTTSKKQQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-21 | 234 | 293 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_12691 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095811 | 3e-80 | BT095811.1 Soybean clone JCVI-FLGm-19N6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020218132.1 | 1e-159 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 2e-62 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A151TIB4 | 0.0 | A0A151TIB4_CAJCA; ZF-HD homeobox protein At4g24660 family | ||||
STRING | GLYMA11G07360.1 | 1e-130 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-59 | homeobox protein 24 |