PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12645
Common NameKK1_013034
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 435aa    MW: 48776.8 Da    PI: 6.452
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12645genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.63e-84784342374
           GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    +e L+++A+++++++l+ aq +L+rl+++ +sp+g+p+qR+a+yf+eAL++ l++      +  +p+ +s  + ++++  +k+fs +sPi+ fs +
  C.cajan_12645  78 IEDLIRAADCFDTKQLHVAQVILERLNQRlRSPAGKPLQRAAFYFKEALESLLSG------SNRTPRLSSLVEIVHSIRTFKAFSGISPIPMFSIF 167
                    678*************************99*************************......6667777777778999999999************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    t+Nq +l+ ++ ++ +H+iDfdi+ G+Q+++L++++a++++++p lRiT+v+++e   + e   ++++La+fA el+++++ +++  +++e+++++
  C.cajan_12645 168 TTNQIVLDHAA-SSFMHVIDFDIGLGIQYASLMKEIAEKAAESPVLRITAVVPEE--FAVESTLVRDNLAQFALELRIRVHVEFVPLRTFETISFK 260
                    ********976.5799*************************************55..77888899****************9999999******** PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.....sFlerflealeyysalfdsl.eaklpreseer 282
                    + ++  gE++aV l+ +++r l   ++    + ++L  v+++sP vvv+v+ e   +s+     sF ++++++leyys++++sl ++++    e+ 
  C.cajan_12645 261 AVKLVDGEKTAVLLSPAIFRHL---GN----TAAFLADVRRISPGVVVFVDGEGWAESAtaavaSFRRGVVSSLEYYSMMLESLdASTVVGGGEWV 349
                    *********************9...44....456*****************9955544334566********************66677777799* PP

           GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    + +E   ++++i  +v  + +       ++  Wre++  aG++pv+ls++a  qa++ll+k + +g++v +++++lvl W+dr++v++SaWr
  C.cajan_12645 350 RRIEMLQVRPRILAAVESAWR-------RMPPWREAFYGAGMRPVQLSQFADFQAECLLAKSQIRGFHVAKRQNELVLFWHDRAMVATSAWR 434
                    ************998866555.......589************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.63651414IPR005202Transcription factor GRAS
PfamPF035141.0E-8178434IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MKDLGLHDDS GAPVLKTNEN NNTCEDFTPF DHALEFTTLS DMYSNSTQNQ NLAYNNYPAN  60
ATLDHLIHDF NHNGFDFIED LIRAADCFDT KQLHVAQVIL ERLNQRLRSP AGKPLQRAAF  120
YFKEALESLL SGSNRTPRLS SLVEIVHSIR TFKAFSGISP IPMFSIFTTN QIVLDHAASS  180
FMHVIDFDIG LGIQYASLMK EIAEKAAESP VLRITAVVPE EFAVESTLVR DNLAQFALEL  240
RIRVHVEFVP LRTFETISFK AVKLVDGEKT AVLLSPAIFR HLGNTAAFLA DVRRISPGVV  300
VFVDGEGWAE SATAAVASFR RGVVSSLEYY SMMLESLDAS TVVGGGEWVR RIEMLQVRPR  360
ILAAVESAWR RMPPWREAFY GAGMRPVQLS QFADFQAECL LAKSQIRGFH VAKRQNELVL  420
FWHDRAMVAT SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-228343325378Protein SCARECROW
5b3h_A2e-228343324377Protein SCARECROW
5b3h_D2e-228343324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12645
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354170.0AC235417.1 Glycine max strain Williams 82 clone GM_WBb0135A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217202.10.0scarecrow-like protein 15
SwissprotO232101e-158SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A151TI460.0A0A151TI46_CAJCA; Scarecrow-like protein 15
STRINGGLYMA11G06980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-160GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]