PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_12481 | ||||||||
Common Name | KK1_012861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 131aa MW: 14550.8 Da PI: 9.4178 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 49 | 69 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp C+k F+++ H+r H C.cajan_12481 49 CPVCNKEFTSWKAAFGHMRAH 69 *******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MKTPWQVLEE LCGGSSTPVA VAPVSEGVLQ PKKRKTSEVR DPPRGKPICP VCNKEFTSWK 60 AAFGHMRAHP NRDYRGFYKP PAFPSSSSSK DQPPPSANNN KGKANYLINK QCLCHMCMHV 120 CAFDNFILCV N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 36 | PKKRKTS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_12481 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020216085.1 | 1e-70 | zinc finger protein ZAT2 | ||||
TrEMBL | A0A151THM2 | 2e-93 | A0A151THM2_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA11G09030.1 | 6e-28 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10202 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35700.1 | 1e-14 | C2H2 family protein |