PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_12394 | ||||||||
Common Name | KK1_012773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GRF | ||||||||
Protein Properties | Length: 331aa MW: 36654.8 Da PI: 8.6855 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 68.7 | 7.5e-22 | 66 | 110 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++ +++k+C+rH+ r r rsrk++e+ C.cajan_12394 66 DPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVES 110 79****************************************986 PP | |||||||
2 | QLQ | 57.8 | 3.4e-20 | 13 | 48 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ+++L++Q+l++KyL a++ vPp+Ll++i+k C.cajan_12394 13 PFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRK 48 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.5E-12 | 12 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.693 | 13 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-15 | 13 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.698 | 66 | 110 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.9E-19 | 67 | 109 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MSVPPPPPPL WTPFTAAQWH ELEHQALIFK YLKAGLSVPP DLLLPIRKSL QFLSHPSLGY 60 YGKKIDPEPG RCRRTDGKKW RCSRDAHPDS KYCDRHMIRR RYRSRKPVES QSHSSSSSSS 120 ASSNPVAAAA SSTASAPASA SATASTLHTL PLHTNGAREG FSFTLGNANT NTLPHLHMDP 180 LTLPGDSAKK TYRFGLNSEA DEHNVLQKDL GSVRYQGYDF TSDGMWSHMS QIPSSTVSES 240 RSSSTMLGNC FQQQTMRDAE LLSLETARTK ELVFSGQLSS SGSLKQEYQP PQSLFSDWDW 300 KKDLSSSTIE YRPNKDFNCN PDVNVDSNGS L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_12394 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-137 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020218094.1 | 0.0 | growth-regulating factor 3 | ||||
TrEMBL | A0A151THF1 | 0.0 | A0A151THF1_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA01G35145.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14948 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-38 | growth-regulating factor 5 |