PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12264
Common NameKK1_012638
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family AP2
Protein Properties Length: 566aa    MW: 61998.1 Da    PI: 7.5254
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12264genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.6e-11377433155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfg.....taeeAakaaiaarkkleg 55 
                    s y+GV++++++grW A+I  +     +k  +lg+f      t+eeAa+a++ a+ k++g
  C.cajan_12264 377 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFAhmftaTEEEAAEAYDIAAIKFRG 433
                    57****************988532...5********644444889*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.63E-11226344No hitNo description
SMARTSM003801.2E-12227348IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-8227249IPR001471AP2/ERF domain
PROSITE profilePS5103213.327227342IPR001471AP2/ERF domain
PRINTSPR003671.1E-5228239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-8305343IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-7312344IPR016177DNA-binding domain
PRINTSPR003671.1E-5324344IPR001471AP2/ERF domain
PfamPF008475.0E-6377433IPR001471AP2/ERF domain
CDDcd000184.36E-16377441No hitNo description
SuperFamilySSF541712.03E-14377442IPR016177DNA-binding domain
SMARTSM003801.3E-26378447IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-15378441IPR001471AP2/ERF domain
PROSITE profilePS5103215.079378441IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MARATNWLSF SLSPMEMLRT SEPQFAQYDA ASATSSHHYY LDNLYNNGWG NGNLKSQVLM  60
EQNLNQSEVS FVDSSTHSRG VSHAPPPKLE DFLGSDSSAV MRYSDSQTET QDSSLTHMYD  120
HHGSAAYFGD HQDLKAIAGF QAFSTNSGSE VDDSASIGKA QPSEFGTHSI ESSVNEFNAF  180
SAASGGCGGA SGTLSLAVAQ STEKAVVAAD SDSSKKVVET FGQRTSIYRG VTRHRWTGRY  240
EAHLWDNSCR REGQARKGRQ VLVTSLFCVF ISIDLIRCAA ILPLVSRVSL LSCLLRHVNL  300
SFLFSLCILY LIRGYDKEDK AARAYDLAAL KYWGPTATTN FPVSNYSKEV EEMKHVTKQE  360
FIASLRRKSS GFSRGASIYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFA HMFTATEEEA  420
AEAYDIAAIK FRGANAVTNF EMNRYDVEAI MKSSLPVGGA AKRLKLSLES EQKVAVNSNQ  480
QNPQCVNVSG NINFSSIHQP LASIPCGIPF DSTTAYYHHN LFQHFHPNNA GTAASAVTSA  540
NATATGLTAL PPPSAAEFFI WPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12264
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216139.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-163AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A151TH350.0A0A151TH35_CAJCA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_007158361.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.31e-163AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]