PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_12224 | ||||||||
Common Name | KK1_012597 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 201aa MW: 21433 Da PI: 10.1413 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.1 | 1.6e-31 | 41 | 94 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k+rY+eClkNhA+ +Ggha+DGCgEfm++ g+egt +alkCaAC+CHRnFHR+e C.cajan_12224 41 KARYRECLKNHAVGIGGHALDGCGEFMAA-GTEGTLDALKCAACNCHRNFHRKEX 94 689*************************9.999********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-23 | 30 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.2E-29 | 42 | 94 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.9E-29 | 43 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.26 | 44 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-32 | 125 | 200 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.24E-19 | 126 | 199 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.7E-26 | 138 | 194 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MAGGASYDSL PNPTRMKMPG GAEVMAATPV RSTSNGAGAG KARYRECLKN HAVGIGGHAL 60 DGCGEFMAAG TEGTLDALKC AACNCHRNFH RKEXRGVLPH RAAGTLALPS TSGGGGTQST 120 REDQEDVSNP SAGGSGSKKR FRTKFTSEQK DKMLDLAEKL GWRIQKHDEA VVQAFCNETG 180 VKRHVLKVWM HNNKHTLGKK P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-27 | 139 | 196 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_12224 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-113 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020216790.1 | 1e-138 | zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9SB61 | 3e-71 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A151TGZ5 | 1e-146 | A0A151TGZ5_CAJCA; ZF-HD homeobox protein At4g24660 family | ||||
STRING | GLYMA02G04550.2 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-72 | homeobox protein 22 |
Publications ? help Back to Top | |||
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