PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12054
Common NameKK1_012423
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 308aa    MW: 34997.6 Da    PI: 5.0535
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12054genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092512852155
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    k +yp+++++ eLA+++gL+++q+ +WF N+R ++
  C.cajan_12054 251 KWPYPTEADKIELARSTGLDQKQINNWFINQRKRH 285
                    679*****************************885 PP
2ELK30.77e-11205226122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK+ LlrK+++++g+Lk EFs
  C.cajan_12054 205 ELKDKLLRKFGSHIGTLKLEFS 226
                    9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.0E-2467111IPR005540KNOX1
PfamPF037901.6E-2369110IPR005540KNOX1
SMARTSM012564.7E-27117168IPR005541KNOX2
PfamPF037914.8E-25121167IPR005541KNOX2
PfamPF037892.8E-8205226IPR005539ELK domain
SMARTSM011886.1E-6205226IPR005539ELK domain
PROSITE profilePS512139.725205225IPR005539ELK domain
PROSITE profilePS5007113.232225288IPR001356Homeobox domain
SuperFamilySSF466895.99E-20226297IPR009057Homeodomain-like
SMARTSM003892.1E-14227292IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-29230289IPR009057Homeodomain-like
CDDcd000861.33E-14237289No hitNo description
PfamPF059208.7E-18245284IPR008422Homeobox KN domain
PROSITE patternPS000270263286IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDEMYGVPST AEYADKALMT PENLIFPADY HGYLAAARIP MFGSDELFSA EPSAGIQRPH  60
EEDVASAVMK AKIASHPHYP RLLQAYIDCQ KVGAPPEIAR LLDEIRREND LCKSDFVSTC  120
FGADPELDEF METYCDMLVK YKSDLARPFD EATTFLNKIE MQLSHLCTGA SVSTLSDDGG  180
VSSEEDLSTG DGDAQDGQVK GEDRELKDKL LRKFGSHIGT LKLEFSKKKK KGKLPKEARQ  240
ILLQWWNVHY KWPYPTEADK IELARSTGLD QKQINNWFIN QRKRHWKPSE NMQFSMMENL  300
NGRFLADE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12054
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2569680.0KC256968.1 Caragana korshinskii Knotted-1 homeobox protein (KN-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217998.10.0homeobox protein knotted-1-like 6
RefseqXP_029127471.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-142KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A151TGH10.0A0A151TGH1_CAJCA; Homeobox protein knotted-1-like 6
STRINGXP_007157365.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-136KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]