PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11748
Common NameKK1_012103
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family Whirly
Protein Properties Length: 259aa    MW: 29304.5 Da    PI: 8.8873
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11748genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly142.51.7e-44752201139
         Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanata..erkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                    s+y  k+ ++v ++ p+fe+ +sg+  ++r+G +ll++a++ +  e +ydW++k++fals+ e+a+l++l+s++scef+h++++ +s+e +vrk+l
  C.cajan_11748  75 SIYTLKGVITVAPRPPEFEQKNSGAYAVSREGYVLLQFAPSLGadEVTYDWNQKEVFALSVSEMATLINLGSRDSCEFLHETMKPKSDEYEVRKVL 170
                    79***************************************8833579************************************************ PP

         Whirly  95 kvePlpdGsGlfvnlsvtns.....lvkgnesfsvPvskaefavlrsllv 139
                    kveP+ d sG++++lsv+++     +++ ++s+ +Pv +ae avlrs ++
  C.cajan_11748 171 KVEPVLDASGHLISLSVQKKhenenMNEIEKSIFIPVVRAELAVLRSTFN 220
                    *****************987222113556799**************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.5E-5664240IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.87E-4969259IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.0E-4476217IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSQVQSITLK HRSLPMHSFV PPNFLIPLKR NVSLTPTPNS PSLSVKCYHP KPSSSPPQYP  60
PIGGESLQKV YVGYSIYTLK GVITVAPRPP EFEQKNSGAY AVSREGYVLL QFAPSLGADE  120
VTYDWNQKEV FALSVSEMAT LINLGSRDSC EFLHETMKPK SDEYEVRKVL KVEPVLDASG  180
HLISLSVQKK HENENMNEIE KSIFIPVVRA ELAVLRSTFN YIMPYLLGWN AFANTIKPEV  240
YNRVNSTNPR YRANDEWNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A4e-706425832219p24: plant transcriptional regulator PBF-2
1l3a_B4e-706425832219p24: plant transcriptional regulator PBF-2
1l3a_C4e-706425832219p24: plant transcriptional regulator PBF-2
1l3a_D4e-706425832219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11748
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217545.10.0single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9M9S35e-73WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A151TFK00.0A0A151TFK0_CAJCA; Uncharacterized protein
STRINGGLYMA01G05000.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64163251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.12e-75ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Lepage É,Zampini É,Brisson N
    Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.
    Plant Physiol., 2013. 163(2): p. 867-81
    [PMID:23969600]
  2. Carella P,Wilson DC,Cameron RK
    Some things get better with age: differences in salicylic acid accumulation and defense signaling in young and mature Arabidopsis.
    Front Plant Sci, 2014. 5: p. 775
    [PMID:25620972]
  3. Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N
    Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.
    Genome Res., 2015. 25(5): p. 645-54
    [PMID:25800675]
  4. Ren Y,Li Y,Jiang Y,Wu B,Miao Y
    Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 749-763
    [PMID:28412544]
  5. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  6. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  7. Guan Z,Wang W,Yu X,Lin W,Miao Y
    Comparative Proteomic Analysis of Coregulation of CIPK14 and WHIRLY1/3 Mediated Pale Yellowing of Leaves in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:30065159]