PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_11379 | ||||||||
Common Name | KK1_011708 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 20836.9 Da PI: 6.4322 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H C.cajan_11379 33 YECTFCKRGFTNAQALGGHMNIH 55 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-5 | 30 | 59 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.98E-7 | 30 | 59 | No hit | No description |
PROSITE profile | PS50157 | 11.468 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0097 | 33 | 55 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051973 | Biological Process | positive regulation of telomerase activity | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MNSEKPVSPE NLSEENDHQE EAHDDSGGTK RSYECTFCKR GFTNAQALGG HMNIHRKDRA 60 KAKQFTPEAS SPIINKFNND ESMALPFVSE ILSQPTRPNY SILESQRNCD VHFHPPPPAH 120 AFYYEFYNPR SRPSSLNQEL RDANLSLQIG PSHHVDDIHQ VRRGNQKDKE VDLELRLGHD 180 PY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_11379 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-154 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020218114.1 | 1e-135 | transcriptional regulator TAC1 | ||||
TrEMBL | A0A151TEJ9 | 1e-134 | A0A151TEJ9_CAJCA; Putative transcriptional regulator RABBIT EARS | ||||
STRING | XP_007144064.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 1e-16 | C2H2 family protein |