PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11329
Common NameKK1_011657
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 26125.9 Da    PI: 6.7955
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11329genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-26959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien++ rqvtfskRr g++KK +ELSvLCda++ +iifsstgk+ ++++
  C.cajan_11329  9 KRIENTTTRQVTFSKRRGGLFKKTKELSVLCDAQIGLIIFSSTGKMWDWCT 59
                   79***********************************************96 PP
2K-box53.11.4e-18821611089
          K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                     ++  e+l +++a L++e+  L+  + ++lGed++ L++++L +Leq+Le+s+ k+R+++nell +q+e+l++k ++ ++
  C.cajan_11329  82 RDHPREELFHDMAMLRQETLRLELGIQRYLGEDMGCLQYEDLSKLEQELENSVAKVRNRQNELLQQQMENLRRKIHDEEQ 161
                    445567888999**************************************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.249161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-31289IPR002100Transcription factor, MADS-box
CDDcd002651.13E-40278No hitNo description
PRINTSPR004041.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-1485160IPR002487Transcription factor, K-box
PROSITE profilePS5129712.27586175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTTRQVT FSKRRGGLFK KTKELSVLCD AQIGLIIFSS TGKMWDWCTE  60
PFRMEQIIEK YQRSTGARIP ERDHPREELF HDMAMLRQET LRLELGIQRY LGEDMGCLQY  120
EDLSKLEQEL ENSVAKVRNR QNELLQQQME NLRRKIHDEE QRAVLEFQKA TVEASKPVHV  180
MDHFPFFEEQ PAGSILQLAS PVLPHLQYPY LQLAQPNIQD SVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-17171169MEF2C
5f28_B3e-17171169MEF2C
5f28_C3e-17171169MEF2C
5f28_D3e-17171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11329
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150437e-65AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217664.11e-162protein TRANSPARENT TESTA 16 isoform X1
RefseqXP_020217665.11e-162protein TRANSPARENT TESTA 16 isoform X1
RefseqXP_020217666.11e-162protein TRANSPARENT TESTA 16 isoform X1
RefseqXP_020217667.11e-162protein TRANSPARENT TESTA 16 isoform X1
SwissprotQ9ATE55e-64FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A151TEH21e-165A0A151TEH2_CAJCA; MADS-box protein FBP24
STRINGXP_007153067.11e-132(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.32e-54MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]