PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_11235

Common Name

KK1_011562

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C3H

Protein Properties

Length: 482aa MW: 52450.7 Da PI: 4.7925

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_11235	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.6	2.7e-10	145	167	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tG Ck+G +CkF+H+ C.cajan_11235 145 EDCAFYMKTGNCKFGFNCKFNHP 167 89********************8 PP
2	zf-CCCH	28.3	3.1e-09	191	213	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C++++r+G Ck+G +Ck++H C.cajan_11235 191 MTECKYYQRSGGCKFGKSCKYNH 213 679******************** PP
3	zf-CCCH	42	1.5e-13	235	260	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG Ck+G++CkF+H+ C.cajan_11235 235 PGERECPYYMRTGSCKFGANCKFNHP 260 5789*********************9 PP
4	zf-CCCH	29.5	1.3e-09	370	396	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Ck+ ++CkF+H++ C.cajan_11235 370 PGEPECNFFLKTGDCKFKSNCKFHHPK 396 5799*********************96 PP
5	zf-CCCH	33.4	7.4e-11	417	441	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++r+G+Ck+G+ Ck+ H+ C.cajan_11235 417 DQSVCSHYSRYGICKFGPACKYDHP 441 5789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	9.16E-6	140	169	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.211	141	169	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-4	141	168	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.2E-8	145	167	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-4	147	166	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.4E-5	188	215	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.845	188	216	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-7	190	213	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	191	218	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-4	194	215	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.4E-7	234	261	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.089	234	262	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.8E-11	236	260	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-6	237	261	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-5	240	259	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-4	369	396	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	369	397	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.4E-7	371	396	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	374	398	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-6	413	441	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.9E-4	415	442	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.521	415	443	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-8	417	441	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MEGSESDSAA LSNSNGAEPQ LEAPSSPVAH PEPSDLNHAA EEDPLAGELQ TKLDLKGGDE 60 GEEKVSNFND GGGVCDEETA KGDGDSRGWE TNSWNEEVGV DVDVEGDGDG DVDVHDDDDD 120 GDGVEKKEEK SSGGTHQYPL RPEAEDCAFY MKTGNCKFGF NCKFNHPIRR KSQATKEKAG 180 EREEPTDRSG MTECKYYQRS GGCKFGKSCK YNHTRGKFST TPVLELNFLG LPIRPGEREC 240 PYYMRTGSCK FGANCKFNHP DPTAGGGCDP PSGYGNGGSI SLQGVSQPSW SSSRTLNEAT 300 PFVPMMLSPT QGVSTQSSDW NGYQAPVYLP ERSMHPPSTF VMNNPTIDTN VYMPHPHQKQ 360 VLAEEFPERP GEPECNFFLK TGDCKFKSNC KFHHPKNRIA RLPPCNLSDK GLPLRPDQSV 420 CSHYSRYGIC KFGPACKYDH PINLQPLMPE LGQQSYSNSA SVEVAGIGGS AVTTDATIQQ 480 SV

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MEGSESDSAA LSNSNGAEPQ LEAPSSPVAH PEPSDLNHAA EEDPLAGELQ TKLDLKGGDE  60
GEEKVSNFND GGGVCDEETA KGDGDSRGWE TNSWNEEVGV DVDVEGDGDG DVDVHDDDDD  120
GDGVEKKEEK SSGGTHQYPL RPEAEDCAFY MKTGNCKFGF NCKFNHPIRR KSQATKEKAG  180
EREEPTDRSG MTECKYYQRS GGCKFGKSCK YNHTRGKFST TPVLELNFLG LPIRPGEREC  240
PYYMRTGSCK FGANCKFNHP DPTAGGGCDP PSGYGNGGSI SLQGVSQPSW SSSRTLNEAT  300
PFVPMMLSPT QGVSTQSSDW NGYQAPVYLP ERSMHPPSTF VMNNPTIDTN VYMPHPHQKQ  360
VLAEEFPERP GEPECNFFLK TGDCKFKSNC KFHHPKNRIA RLPPCNLSDK GLPLRPDQSV  420
CSHYSRYGIC KFGPACKYDH PINLQPLMPE LGQQSYSNSA SVEVAGIGGS AVTTDATIQQ  480
SV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_11235

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020217159.1	0.0	zinc finger CCCH domain-containing protein 67
Swissprot	Q9STM4	1e-132	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A151TE42	0.0	A0A151TE42_CAJCA; Zinc finger CCCH domain-containing protein 43
STRING	GLYMA17G13580.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4156	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-133	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]