PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11226
Common NameKK1_011553
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 523aa    MW: 58709.9 Da    PI: 6.2036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11226genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3681.3e-1121515221374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykal.ppsetseknsseelaalklfsevsPilkfs 94 
                    lv+lL++cAeav+ +d++ a+ lL++l+ +a   g+++qR+a++f+++L +rl+  ++ + ++ + p+ +  +  s+e   a++l +e++P ++f+
  C.cajan_11226 151 LVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLTERLNLIQPiGSVSPMpPMMNIMDAASEEMEEAFRLVYELCPHIQFG 246
                    689**************************************************9844313333441333333344899999*************** PP

           GRAS  95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                    h++aN+++lea+ege+ vH++D+++s    +G QW  L+q+L++R++g p  +lRiTgvg       e+l+++g+ L+ +A++lgv++ef++ v k
  C.cajan_11226 247 HFVANSTVLEAFEGESFVHVVDLGMSlglrHGHQWRGLIQSLSNRANGEPvrRLRITGVGL-----CERLQTIGDELSVYANNLGVNLEFSL-VRK 336
                    **********************98753333788*************8888779********.....89***********************9.8** PP

           GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                    +le+l++e+++v+ +E+l+Vn++lqlh +++es    +   +vL++v +l Pkv+v+veq+++hn++ Fl rf+e+l+yysa+fdsl++ +p+ + 
  C.cajan_11226 337 NLENLQPEDIEVRGEEVLVVNSILQLHCVVKESRGALN---SVLQMVHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMFPKYDT 429
                    ******************************88877777...8****************************************************** PP

           GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +r+k+E++++g+ei+n+v+ceg +r erhe++ +Wr+r+++aGF+++p++   ++qak  l k k  +gy+v ee+g+lvlgWk++p+v+vS+W+
  C.cajan_11226 430 KRAKMEQFYFGEEIKNIVSCEGPMRMERHERVDQWRRRMSRAGFQAAPVKM--VAQAKQWLLKNKvCEGYTVVEEKGCLVLGWKSKPIVAVSCWK 522
                    ************************************************975..55666666666668***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.294125503IPR005202Transcription factor GRAS
PfamPF035144.4E-110151522IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAPPLYSGFN GEIDAENPSF FLDQWETVHP APVYYHHQPI SENITDDSST LVLPSCDGTI  60
RDNKRVKRTV GIPVWLGTFS TSSSNINNPS FLNSNTSNRN RNSIPKLHFR DHIRTYTQRY  120
LAVEEAEEEA KSSESGGSCE EEDGCADGVR LVQLLIACAE AVACRDKSHA SILLSELKAN  180
ALVFGSSFQR VASCFVQGLT ERLNLIQPIG SVSPMPPMMN IMDAASEEME EAFRLVYELC  240
PHIQFGHFVA NSTVLEAFEG ESFVHVVDLG MSLGLRHGHQ WRGLIQSLSN RANGEPVRRL  300
RITGVGLCER LQTIGDELSV YANNLGVNLE FSLVRKNLEN LQPEDIEVRG EEVLVVNSIL  360
QLHCVVKESR GALNSVLQMV HGLGPKVLVM VEQDSSHNGP FFLGRFMESL HYYSAIFDSL  420
DVMFPKYDTK RAKMEQFYFG EEIKNIVSCE GPMRMERHER VDQWRRRMSR AGFQAAPVKM  480
VAQAKQWLLK NKVCEGYTVV EEKGCLVLGW KSKPIVAVSC WKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6115852126378Protein SCARECROW
5b3h_A2e-6115852125377Protein SCARECROW
5b3h_D2e-6115852125377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216221.10.0DELLA protein RGL1
RefseqXP_020216297.10.0DELLA protein RGL1-like
TrEMBLA0A151TE360.0A0A151TE36_CAJCA; DELLA protein RGL1
STRINGXP_007155519.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-79RGA-like 1