PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10910
Common NameKK1_011230
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 678aa    MW: 75328 Da    PI: 6.7603
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10910genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23115215198
                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++e
  C.cajan_10910 115 FSKILTASDTSTHGGFSVLRRHATEClpqldMSQTTPTQELVAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGENGE 208
                    889***************************9666677789************************************************..449999 PP

                    .EEEEE- CS
             B3  92 lvvkvfr 98 
                    l+v+v+r
  C.cajan_10910 209 LRVGVRR 215
                    *****98 PP
2Auxin_resp1003.3e-33241320183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha+ t+++F v+Y+Pr+  s+F++ v+k+++ ++++vsvGmRfkm+fe eds+err+sGt+vgv d++p  WpnS+WrsLk
  C.cajan_10910 241 ASHAVLTRTMFVVYYKPRT--SQFIIGVNKYLDGINRNVSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSP-GWPNSRWRSLK 320
                    68999*************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.29E-41105244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-39109230IPR015300DNA-binding pseudobarrel domain
CDDcd100175.79E-20113215No hitNo description
SMARTSM010195.9E-22115217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.252115217IPR003340B3 DNA binding domain
PfamPF023622.0E-21115215IPR003340B3 DNA binding domain
PfamPF065071.1E-30241320IPR010525Auxin response factor
PfamPF023093.2E-6534592IPR033389AUX/IAA domain
SuperFamilySSF542778.83E-13552632No hitNo description
PROSITE profilePS5174523.855556637IPR000270PB1 domain
PfamPF023094.1E-5601637IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
VGGGDLYRQL WKLCAGPLVD VPREGERVLY FPQGHMEQLQ ASTNQGLNQE LSQQIPHFNL  60
PPKILCRVIH CQLLAEQETD EVYARITLLP DSVQGEPMDR DPIPPETQKQ TFHSFSKILT  120
ASDTSTHGGF SVLRRHATEC LPQLDMSQTT PTQELVAKDL HGFEWKFKHI FRGQPRRHLL  180
TTGWSTFVTS KRLVAGDAFV FLRGENGELR VGVRRVAQPQ SSMPSSVISS QSMHLGVLAT  240
ASHAVLTRTM FVVYYKPRTS QFIIGVNKYL DGINRNVSVG MRFKMRFEVE DSPERRFSGT  300
IVGVGDVSPG WPNSRWRSLK VQWDEPATIP RPERVSPWEI EPFVPSTALN VAQQVPKSKR  360
SRPAEASSSE IGPSSPAPAF WYHGPQPHDP TPLGGTAEVQ SNESAVVRSL RLKEINGNPM  420
NGKNNSSKVP VEGMWPSSPH LNVVSSNFLA DAKAVAAQSP ISGYAPVNDD SAPDPTECGK  480
RSENPMDCWL FGVNLTNNFT NPALPDKELG CPTSGPKDSV PVAPCETDAP HNSNKEHKQI  540
ISDERHTKQA NVPSTRTRTK VQMQGVAVGR AVDLTVLKDY DDLVDELEKV FDIKGELRVQ  600
TKWAITFTDD ENDTMLVGDD PWPEFCTMVK KIFICAKEDV KKMKNKHCAS SSEGEETLLS  660
QHSHNRDETQ QNSCDLTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-162634319355Auxin response factor 1
4ldw_A1e-162634319355Auxin response factor 1
4ldw_B1e-162634319355Auxin response factor 1
4ldx_A1e-162634319355Auxin response factor 1
4ldx_B1e-162634319355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212757.10.0auxin response factor 18 isoform X1
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A151TY550.0A0A151TY55_CAJCA; Auxin response factor (Fragment)
STRINGXP_007147325.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]