PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_10641 | ||||||||
Common Name | KK1_010950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 318aa MW: 36705 Da PI: 7.5939 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.0007 | 175 | 199 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H C.cajan_10641 175 FYCDLCNKQYKLAMEFEAHLSSydH 199 78*****************987555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00443 | 1.3E-18 | 64 | 109 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 16.785 | 66 | 111 | IPR000467 | G-patch domain |
Pfam | PF01585 | 3.1E-16 | 67 | 107 | IPR000467 | G-patch domain |
SuperFamily | SSF57667 | 2.24E-5 | 173 | 209 | No hit | No description |
Pfam | PF12171 | 1.8E-5 | 175 | 202 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 177 | 199 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDYRWTNGRQ ETGGRDRRQS KREQAYEESL IEDLAEDFRL PINHRPTENV DLDNVEQASL 60 DTQLTSSNIG FKLLQKMGWK GKGLGKDEQG IIEPIKSGIR DPRLGVGKQE EDDFFTAEEN 120 IQRKKLDVEL EETEEHMKKR EKAAYSLYAC LLTGLVLAER EQKIQTEVKE IRKVFYCDLC 180 NKQYKLAMEF EAHLSSYDHN HRKRFKQMKE MHGSSSRDDR QKREQQRQER EMAKFAQIAD 240 AQKQQRLQLQ EESGSATVSS ESRTATALTD QVQRNTLKFG FSSKGSGSKI TIGVKKQNVA 300 KKQNVPISSI FSNDSDDE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_10641 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096374 | 0.0 | BT096374.1 Soybean clone JCVI-FLGm-15D7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213578.1 | 0.0 | G patch domain-containing protein 8 | ||||
TrEMBL | A0A151TXD4 | 0.0 | A0A151TXD4_CAJCA; G patch domain-containing protein 8 | ||||
STRING | GLYMA19G41310.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5977 | 24 | 28 |