PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_10447

Common Name

KK1_010747

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 503aa MW: 55229.9 Da PI: 8.8211

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_10447	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H C.cajan_10447 94 FVCEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP
2	zf-C2H2	16.2	2.9e-05	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ C.cajan_10447 170 WKCDKCSKRYAVQSDWKAHQKTC 192 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	93	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.95E-8	93	116	No hit	No description
Pfam	PF12171	8.0E-5	94	116	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	94	116	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	94	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	75	135	165	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.3E-6	158	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.95E-8	165	191	No hit	No description
SMART	SM00355	89	170	190	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0090502	Biological Process	RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676	Molecular Function	nucleic acid binding
GO:0004526	Molecular Function	ribonuclease P activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MTNISGDEGS LSSANTVEEV HQENKQQQPQ NHPHGSASGV CNSNSSTNQQ QQQATKKKRN 60 LPGTPGKYYS TLGFNPNAEV IALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW 120 KLRQRGSNDV KKRVYVCPEP SCVHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKRYA 180 VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LTEENNRVSQ GLTPNMQNEL 240 ARDLMATMPL STSSNTVPQK TLSQEHVPMP FKSMSMGGGM LSTTSGTLFG GPKNMSPSCS 300 TLQLSSNNST AFNYFQDSTI SSASAHMSAT ALLQKAAQMG ATASSNSINS PMMQKSFVSS 360 MACSDHLHNS SSYDPFHQSH MAGISGAGAF TNQIFHKGQQ DHMPLIFDAN NTTMGMLGTM 420 FMGSDHNQGL MNNMEQGLDV AEGNPIRASK FGGGDDMTTV HDFLGVGATS RAASLHEPQR 480 LRIMNHFHLP HGDSAMEKSI WDI

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MTNISGDEGS LSSANTVEEV HQENKQQQPQ NHPHGSASGV CNSNSSTNQQ QQQATKKKRN  60
LPGTPGKYYS TLGFNPNAEV IALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW  120
KLRQRGSNDV KKRVYVCPEP SCVHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKRYA  180
VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LTEENNRVSQ GLTPNMQNEL  240
ARDLMATMPL STSSNTVPQK TLSQEHVPMP FKSMSMGGGM LSTTSGTLFG GPKNMSPSCS  300
TLQLSSNNST AFNYFQDSTI SSASAHMSAT ALLQKAAQMG ATASSNSINS PMMQKSFVSS  360
MACSDHLHNS SSYDPFHQSH MAGISGAGAF TNQIFHKGQQ DHMPLIFDAN NTTMGMLGTM  420
FMGSDHNQGL MNNMEQGLDV AEGNPIRASK FGGGDDMTTV HDFLGVGATS RAASLHEPQR  480
LRIMNHFHLP HGDSAMEKSI WDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	166	229	3	66	Zinc finger protein JACKDAW
5b3h_F	1e-35	166	229	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_10447

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020213651.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1
Swissprot	Q9SCQ6	1e-108	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A151TWU1	0.0	A0A151TWU1_CAJCA; Zinc finger protein MAGPIE
STRING	XP_007163889.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]