PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_10445

Common Name

KK1_010745

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YB

Protein Properties

Length: 151aa MW: 17025 Da PI: 6.2652

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_10445	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.5	5.5e-55	37	132	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd+++alatlGf+dy +plk yl+kyrelegek C.cajan_10445 37 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICYALATLGFDDYTDPLKRYLHKYRELEGEK 132 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.0E-52	34	144	IPR009072	Histone-fold
SuperFamily	SSF47113	1.07E-40	39	147	IPR009072	Histone-fold
Pfam	PF00808	3.0E-27	42	106	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	8.0E-20	70	88	No hit	No description
PROSITE pattern	PS00685	0	73	89	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	8.0E-20	89	107	No hit	No description
PRINTS	PR00615	8.0E-20	108	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MGDNIGKGSH REGFKYNFTA STTAASDTCS LQDGVIKEQD RLLPIANVGR IMKQILPPNA 60 KISKEAKETM QECVSEFISF VTGEASDKCH KEKRKTVNGD DICYALATLG FDDYTDPLKR 120 YLHKYRELEG EKANQNKANN SYENNIENMY N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-45	36	127	1	92	Transcription factor HapC (Eurofung)
4g92_B	4e-45	36	127	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_10445

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020213515.1	1e-111	nuclear transcription factor Y subunit B-5
Swissprot	O82248	4e-60	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A151TWS5	1e-109	A0A151TWS5_CAJCA; Nuclear transcription factor Y subunit B-5
STRING	GLYMA10G02480.1	8e-88	(Glycine max)
STRING	XP_007144547.1	1e-87	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	9e-62	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]