PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10292
Common NameKK1_010590
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 551aa    MW: 60072.8 Da    PI: 8.1163
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10292genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0589111123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  C.cajan_10292  89 FVCEICNKGFQRDQNLQLHRRGH 111
                    89*******************88 PP
2zf-C2H216.13.2e-05165187123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k++  +s+ k H++t+
  C.cajan_10292 165 WKCDKCSKRYAVQSDWKAHQKTC 187
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.3E-888111No hitNo description
Gene3DG3DSA:3.30.160.601.8E-588111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94989111IPR007087Zinc finger, C2H2
SMARTSM003550.01789111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SMARTSM0035575130160IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-6153186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.3E-8160186No hitNo description
SMARTSM0035589165185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSNISGDEGS FSSGNNGEEV HQENQQQQLQ NQLHDSSSGP SSACNSNSNA STNQQQTKKK  60
RNLPGTPGKY PNAEVVALSP TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR  120
TSTEVKKRVY VCPEPSCVHH NPARALGDLT GIKKHYSRKH GEKKWKCDKC SKRYAVQSDW  180
KAHQKTCGTR EYKCDCGTIF SRRDSFITHR AFCDALTEEN NRVNQGLTSG MPPSLQSQIP  240
DLMSTMPLST SPNTSSKFGD YDPKNPLKSL PQELVPIPFK SMSMGGGMFS TNAGALFGGP  300
KSMSPSSSSL QLGSNTSSSF NYLQDNKNGG LIAGSAQMSA TALLQKAAQM GATASNSINS  360
PMMQKGFVSA PDHVSSTRPP PYSGAMLHHN TSYDHFSPQP DLSTMAGVSS GGAFINHLFQ  420
KGQEISQVFD TNTTGSSIND AGMFSQMPMG SDHTPGLMKN VEQEVSNSTS LIHGRDVAEG  480
STMQPSRFGG SDMTTVHDFL GIGGSTSRAA SLHEPQQHLE ALSHQRSEVM NHFHHHFPHD  540
DSAMEEPMWD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34161224366Zinc finger protein JACKDAW
5b3h_F3e-34161224366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8407700.0HQ840770.1 Phaseolus vulgaris clone BAC B1-157 genotype G19833, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029127062.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1
SwissprotQ9SCQ61e-108IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A151TW900.0A0A151TW90_CAJCA; Zinc finger protein MAGPIE
STRINGXP_007163083.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]