PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_10290

Common Name

KK1_010586

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

HB-other

Protein Properties

Length: 946aa MW: 105448 Da PI: 9.0984

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_10290	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.4	7.5e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e +e+++ g+t +qV+ +F +R + ++ C.cajan_10290 69 KRPRDLLNPKAVNYMQSIFSIKDAVSKKELREISALFGVTVTQVRDFFTSQRSRVRR 125 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.637	66	126	IPR001356	Homeobox domain
SMART	SM00389	3.9E-4	68	130	IPR001356	Homeobox domain
CDD	cd00086	1.34E-4	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-5	69	135	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-6	69	131	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	5.9E-4	222	313	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence Send to blast
MDVWNEDFSE LEIGSSAESF QKFLVSQREL FHSQIDQFQE IVVTQCNLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV NYMQSIFSIK DAVSKKELRE ISALFGVTVT QVRDFFTSQR 120 SRVRRIVQLS KERALSSNSC EEPHDDQINS DPARPIDPAP LNSVGLSNAE ESCSAQEAAL 180 SDLDDSDKQF VDNIFSLMQK EETFSGQEKL MEWILTIQNF SVLLWFLTKG GGMTLATWLS 240 NAAVEEQTTV LLLILKVLCH LPLHKAVPMH ISAILQSVNK LRFYRTSVSD ISNRARVLLS 300 KWSKLLARNQ AIKRPNGVNI GQFMGSESWH SNIDVPEDIL ALSNECSDNF RKVGSPQVMK 360 LLPSSLDDSN RKSTLGVSSS QSRERRKVQL VEQPGQKSAS RSSQVMRAGP VSQGRPMSAD 420 DIQKAKMRAL FMQSKYGKTG SSKDSKETKI DTSYSKPKMD VKEPLWEKCK RVQIPWKIPA 480 EVKLKDTWRV GRGENSKEVD VQKNRIRRER ETIYKTVQEM PPNPKEPWDL EMDYDDTLTP 540 EIPTEQLPDG DGAEIAVSPN QDATHAVQGV ASTSSTSLAT AEPDLELLAV LLKNPGLVFA 600 LTSGQAGSIP SEETVKLLDM IKRGGVSLGL SESTNGNYGT SVEAPEKVEV SLPSPTPSSD 660 PRTSGWSTEA SKNPFSRRSV APDRIIQNHA SVASTNLVSQ IPVTATTVRQ QATILVPSSR 720 QLSSTSVSPY SLPQATNVIP EKPPPLMHVQ TPSSDLGLTM KNNLITANAS SVKLSGTHST 780 LAMRGEGTNY VKPVPNLSVQ HEAPQQQRHH QQEAHYTEPS YRTPVHSYPP QTEKSDHGSD 840 TWRVRQQEVS SSYHSQRNHN NYNTMVGGSR QSGIWDRNNH GRGEFESWSP ENSPTRNPRY 900 APGRNYPESR MNHGRNHRPE WSRQRGSSGH WDPGRQGNRK WHDQRR

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence Send to blast

MDVWNEDFSE LEIGSSAESF QKFLVSQREL FHSQIDQFQE IVVTQCNLTG VNPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV NYMQSIFSIK DAVSKKELRE ISALFGVTVT QVRDFFTSQR  120
SRVRRIVQLS KERALSSNSC EEPHDDQINS DPARPIDPAP LNSVGLSNAE ESCSAQEAAL  180
SDLDDSDKQF VDNIFSLMQK EETFSGQEKL MEWILTIQNF SVLLWFLTKG GGMTLATWLS  240
NAAVEEQTTV LLLILKVLCH LPLHKAVPMH ISAILQSVNK LRFYRTSVSD ISNRARVLLS  300
KWSKLLARNQ AIKRPNGVNI GQFMGSESWH SNIDVPEDIL ALSNECSDNF RKVGSPQVMK  360
LLPSSLDDSN RKSTLGVSSS QSRERRKVQL VEQPGQKSAS RSSQVMRAGP VSQGRPMSAD  420
DIQKAKMRAL FMQSKYGKTG SSKDSKETKI DTSYSKPKMD VKEPLWEKCK RVQIPWKIPA  480
EVKLKDTWRV GRGENSKEVD VQKNRIRRER ETIYKTVQEM PPNPKEPWDL EMDYDDTLTP  540
EIPTEQLPDG DGAEIAVSPN QDATHAVQGV ASTSSTSLAT AEPDLELLAV LLKNPGLVFA  600
LTSGQAGSIP SEETVKLLDM IKRGGVSLGL SESTNGNYGT SVEAPEKVEV SLPSPTPSSD  660
PRTSGWSTEA SKNPFSRRSV APDRIIQNHA SVASTNLVSQ IPVTATTVRQ QATILVPSSR  720
QLSSTSVSPY SLPQATNVIP EKPPPLMHVQ TPSSDLGLTM KNNLITANAS SVKLSGTHST  780
LAMRGEGTNY VKPVPNLSVQ HEAPQQQRHH QQEAHYTEPS YRTPVHSYPP QTEKSDHGSD  840
TWRVRQQEVS SSYHSQRNHN NYNTMVGGSR QSGIWDRNNH GRGEFESWSP ENSPTRNPRY  900
APGRNYPESR MNHGRNHRPE WSRQRGSSGH WDPGRQGNRK WHDQRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_10290

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235349	0.0	AC235349.1 Glycine max strain Williams 82 clone GM_WBb0092H01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020211335.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-164	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A151TWD1	0.0	A0A151TWD1_CAJCA; Homeobox protein LUMINIDEPENDENS
STRING	GLYMA03G36970.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-153	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]