PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10174
Common NameKK1_010464
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 464aa    MW: 50992.2 Da    PI: 9.126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10174genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056284123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  C.cajan_10174 62 FVCEICNKGFQRDQNLQLHRRGH 84
                   89*******************88 PP
2zf-C2H211.40.001138160123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H + +
  C.cajan_10174 138 WKCDKCSKKYAVQSDWKAHSKIC 160
                    58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.21E-76184No hitNo description
PROSITE profilePS5015710.9496284IPR007087Zinc finger, C2H2
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
PfamPF121717.3E-56284IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM0035596103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.21E-7133158No hitNo description
SMARTSM00355150138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MLGQLHSPNS NTSTTTNNSN GSNTNSQPPV TVKKKRNLPG NPDPSAEVIA LSPNTLVATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KLRTTTEVRK RVYVCPEPSC VHHNPARALG  120
DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTKEYKCDCG TIFSRRDSFI  180
THRAFCDALN EENDKFNEGQ LPNMHGSNLQ PPIIPNIVAS LPINTNNHNK HPLPLPHDLM  240
NITMPTKPFN NMAAFTRNLS SPSQLTSNSP NNMFEENNNG LHSPHMSATA LLQKAAQMGA  300
TVNSNMMSDQ KSFSTSMAPP SYGIMNHTMQ NGQQDLSHYN FNANEMGIMS GLDMFNVILD  360
QSKALSKMIE QNNIRSSNGV LHAMNNGNGT RSSGSIDVGG TKGSEDVMTL DLLGIGGGGG  420
GGDGNFYGGD QLQQSEMAAR DEIWRNWSNK NAGLEPFSAT NSNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33134197366Zinc finger protein JACKDAW
5b3h_F2e-33134197366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10174
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213708.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1
SwissprotQ9SCQ61e-111IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A151TVZ90.0A0A151TVZ9_CAJCA; Zinc finger protein MAGPIE
STRINGGLYMA03G39650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.14e-99C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]