PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10044
Common NameKK1_010328
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRF
Protein Properties Length: 377aa    MW: 41473.2 Da    PI: 7.2975
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10044genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.24.5e-26138181144
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                    d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  C.cajan_10044 138 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 181
                    79***************************************987 PP

2QLQ51.92.3e-1869105137
            QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                    s+F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i+k
  C.cajan_10044  69 SYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKK 105
                    78*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-1069105IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-1370103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.50770105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.808138182IPR014977WRC domain
PfamPF088792.2E-22139181IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDLHLKQWRN QHESEEQHST KMPKLLPESH QQPQPSALPL FVPEPNSKVS TLSDSTLATT  60
TNRFPRMGSY FSLSQWQELE LQALIFRYML AGAAVPPELL QPIKKSLLHS PHYFLHHPLQ  120
HYQPALLQSG YWGRGAMDPE PGRCRRTDGK KWRCSRDVVA GQKYCERHMH RGRNRSRKPV  180
ELPTPTSACG GSLGLAASSS ISSPPLASAS LKSPFDLLHM NEQRTSGTKN EDKSSFESED  240
HVGGDGRSGG HMLRHFFDDW PRSLQDSDNV ENNAGRLNSA TCLSISMPGN TSSDVSLKLS  300
TGYGEDPGPR NENVDLEVEA DQLQLNWAGG WASANQVASM GGPLAEALRS STTTSSPTSV  360
LHHVPRGSGS ETSFIST
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10044
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-85AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212803.10.0growth-regulating factor 3
SwissprotQ8L8A72e-94GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A151TVL90.0A0A151TVL9_CAJCA; Uncharacterized protein
STRINGXP_007162865.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.12e-89growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]