PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_10033 | ||||||||
Common Name | KK1_010317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 20691 Da PI: 4.7919 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.5e-19 | 27 | 77 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g+Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+++l+g C.cajan_10033 27 PVYRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFATPEMAAIAYDVAALALKG 77 68*****888.8*********94....468***********************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-11 | 27 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.445 | 28 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 28 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-30 | 28 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-34 | 28 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.14E-30 | 29 | 87 | No hit | No description |
PRINTS | PR00367 | 5.3E-11 | 67 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
HTTNMRSSNT CAASSSRSSN GNTGRHPVYR GVRRRSSGKW VSEIREPKKP NRIWLGTFAT 60 PEMAAIAYDV AALALKGKDA ELNFPNSASS LPVPASSAPR DIQMAAASAA AAVGAANDAL 120 LEGSWGGDAS ASFAQDFSGG NLNHFVDEDL IFDMPNILVN MAEGMLLSPP RFDIATTDYE 180 YMDEDPNLWG FPY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-15 | 26 | 87 | 12 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_10033 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029127059.1 | 1e-137 | ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9SJR0 | 1e-59 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A151TVR4 | 1e-139 | A0A151TVR4_CAJCA; Ethylene-responsive transcription factor ERF024 family (Fragment) | ||||
STRING | GLYMA19G37670.1 | 1e-107 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36450.1 | 4e-41 | ERF family protein |