PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_09896
Common NameKK1_010179
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 300aa    MW: 33120.1 Da    PI: 4.6341
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_09896genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.8e-06274297123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C+ C++sF++ + L++H +  H
  C.cajan_09896 274 YTCKSCNRSFKTDDALNSHNKAkH 297
                    9******************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.0E-6274298IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4274298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.946274300IPR007087Zinc finger, C2H2
PROSITE patternPS000280276297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
FLGVEVKSGE SLKVDPGDDK IVHLSNACLG DVTKDKGGEP VALYVKFGNQ KLVLGTLSSD  60
KFPQISYDLV FEKEFELSHN WKNGSVFFTG FKAESHLESY PFQYYFDEDI PVSAANGKPE  120
FEVKNGVKSN ANEAKQKEKK ADPRKDEKAM EKDASDEDED EDSSEADSDE DSSEDKLTVN  180
GDIESSEGDD DSDEEEDDDD ESDYEKTPKK IEASNKRVID SSKKTPVPVK KTKFVTPQKT  240
DGKSVVHVAT PHPSKQAGKA TVNNKQTPRS GGDYTCKSCN RSFKTDDALN SHNKAKHSAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_09896
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0951671e-158BT095167.1 Soybean clone JCVI-FLGm-6J20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211823.11e-169histone deacetylase HDT1
TrEMBLA0A151TVA00.0A0A151TVA0_CAJCA; Histone deacetylase HDT1 (Fragment)
STRINGGLYMA03G34850.31e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-31histone deacetylase 2C