PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_09819

Common Name

KK1_010100

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 503aa MW: 54578.9 Da PI: 9.0523

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_09819	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H C.cajan_09819 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	13.9	0.00016	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ C.cajan_09819 144 WKCEKCSKKYAVQSDWKAHTKTC 166 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.08E-7	67	90	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	8.0E-5	68	90	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	68	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	68	90	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	98	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.5E-5	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.08E-7	139	164	No hit	No description
SMART	SM00355	130	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0090502	Biological Process	RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676	Molecular Function	nucleic acid binding
GO:0004526	Molecular Function	ribonuclease P activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MQMIPGDPFS LSTSIGGLSN EQNTNANSNP NPNPPPLTKK KRNLPGTPDP DAEVIALSPK 60 TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS NKEVRKKVYI CPEKTCVHHD 120 AARALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHTKTCGTRE YKCDCGTLFS 180 RKDSFITHRA FCDALAEENS RLTSVATSSL NFKSEDVMNA QGGLSSCGLI TGQGMQNVPQ 240 FGSHIFHQRP NLSLWLNQGN HHMNNPLDVA SSSSSGLPEG LQMAQANNTM LGSSSIFSNF 300 GMPPSNSTNP NLSLSPLMGK KGEGGASDLT TLYSESQSNN SNSASPMSAT ALLQKAAQMG 360 STRSTKPSIF SGSFGVMSSS STQTTTLNSN TASQNCDQLD EAFQNMNQHE NFNATSSGST 420 MLGSSTNFSS LTHSSNGFDE FMMQNNMKLH HPGSNTVEHN LTRDFLGVSG SGGGHHPFLP 480 QELAKFASLG SSMGLNQFTA GHQ

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MQMIPGDPFS LSTSIGGLSN EQNTNANSNP NPNPPPLTKK KRNLPGTPDP DAEVIALSPK  60
TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS NKEVRKKVYI CPEKTCVHHD  120
AARALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHTKTCGTRE YKCDCGTLFS  180
RKDSFITHRA FCDALAEENS RLTSVATSSL NFKSEDVMNA QGGLSSCGLI TGQGMQNVPQ  240
FGSHIFHQRP NLSLWLNQGN HHMNNPLDVA SSSSSGLPEG LQMAQANNTM LGSSSIFSNF  300
GMPPSNSTNP NLSLSPLMGK KGEGGASDLT TLYSESQSNN SNSASPMSAT ALLQKAAQMG  360
STRSTKPSIF SGSFGVMSSS STQTTTLNSN TASQNCDQLD EAFQNMNQHE NFNATSSGST  420
MLGSSTNFSS LTHSSNGFDE FMMQNNMKLH HPGSNTVEHN LTRDFLGVSG SGGGHHPFLP  480
QELAKFASLG SSMGLNQFTA GHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-38	140	206	3	69	Zinc finger protein JACKDAW
5b3h_F	8e-38	140	206	3	69	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	106	KLRQRSNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:20356954, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440, ECO:0000269\|PubMed:28211915}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_09819

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by SCR and SHR. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-160	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020212776.1	0.0	zinc finger protein JACKDAW
Swissprot	Q700D2	1e-138	IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBL	A0A151TUV7	0.0	A0A151TUV7_CAJCA; Zinc finger protein JACKDAW
STRING	GLYMA03G33700.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-107	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Hirano Y, et al. Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD. Nat Plants, 2017. 3: p. 17010 [PMID:28211915] Kobayashi A,Miura S,Kozaki A INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves. Plant Mol. Biol., 2017. 94(1-2): p. 1-13 [PMID:28324206] Long Y, et al. In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots. Nature, 2017. 548(7665): p. 97-102 [PMID:28746306] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]