PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_09572 | ||||||||
Common Name | KK1_009841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 166aa MW: 18883.6 Da PI: 9.1848 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.5e-18 | 25 | 79 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k C.cajan_09572 25 RKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 79 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.8 | 4.5e-41 | 25 | 114 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l C.cajan_09572 25 RKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELR-AL 114 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 9 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-19 | 14 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-15 | 23 | 85 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-15 | 25 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.09E-14 | 25 | 82 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.2E-11 | 81 | 115 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.3E-25 | 81 | 124 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MDFCVGNTTK SCDGASDDDE NGSTRKKLRL SKQQSAFLEE SFKEHTTLNP KQKLALAKQL 60 NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCESLTEE NRRLQKELQE LRALKTCQPF 120 YMQLPATTLT MCPSCERVAT NTTGAAATNK NNPAAALSID KPRILP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 29 | TRKKLRL |
2 | 73 | 81 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_09572 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031163 | 1e-134 | KT031163.1 Glycine max clone HN_CCL_195 homeodomain/HOMEOBOX transcription factor (Glyma03g30200.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520539.1 | 1e-93 | homeobox-leucine zipper protein HOX11 | ||||
Refseq | XP_028225408.1 | 1e-93 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | A2Z1U1 | 1e-79 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | P46665 | 2e-79 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
Swissprot | Q67UE2 | 4e-79 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A151TU89 | 1e-118 | A0A151TU89_CAJCA; Homeobox-leucine zipper protein HOX11 | ||||
STRING | GLYMA03G30200.1 | 4e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-66 | homeobox from Arabidopsis thaliana |