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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | C.cajan_09548 | ||||||||
| Common Name | KK1_009816 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 413aa MW: 46022.6 Da PI: 7.988 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 101.9 | 4e-32 | 239 | 293 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+r+rWt++LHe+Fve+v++LGG+e+AtPk+il++m+ +gLt++hvkSHLQkYR+
C.cajan_09548 239 KTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMDTDGLTIYHVKSHLQKYRI 293
68****************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 10.866 | 236 | 296 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 6.0E-29 | 237 | 294 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.69E-17 | 237 | 293 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.8E-23 | 239 | 294 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.9E-9 | 243 | 292 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 2.9E-19 | 324 | 370 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 413 aa Download sequence Send to blast |
MNENKVDWGG LIQQSHGLSG DLNSEFGNRY CQYFDIRQPW NMGSFTMVGG GTEQLPNNNI 60 GSVKSSGTIM SRFDSPASAF YAAENCMGFA EFDSQIGVHS LSSQLCKIHD LEFPLYQSPK 120 ENLFLDSANQ PDPDFDLSNT LQSIVKSQLN SGNQCSRSPE KSNKISCGNF PSSKILPIEQ 180 QKLFIHGVIR GSSNQDHMIS CGSYNLPNAQ MRFSSPNEKL SPTLSGGSVS TNGAVVSSKT 240 RIRWTKDLHE KFVECVNRLG GAEQATPKAI LKMMDTDGLT IYHVKSHLQK YRIAKFIPEP 300 NLGKSDKRAH TKDVHHLDIK TGLQIREALK LQLDAQRCLH EQLEIQRKLQ LRIEEQGREL 360 KKMFDQQQKT SNNLLNTQNS ATDETKNSHK DGEVCVSEGA NNSFFTSKTS PSP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 1e-23 | 239 | 296 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-23 | 239 | 296 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 1e-23 | 239 | 296 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 1e-23 | 239 | 296 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 1e-23 | 239 | 296 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 1e-23 | 239 | 296 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-23 | 239 | 296 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-23 | 239 | 296 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-23 | 239 | 296 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-23 | 239 | 296 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-23 | 239 | 296 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-23 | 239 | 296 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | C.cajan_09548 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT092087 | 0.0 | BT092087.1 Soybean clone JCVI-FLGm-10E9 unknown mRNA. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020212971.1 | 0.0 | uncharacterized protein LOC109797364 isoform X1 | ||||
| TrEMBL | A0A151TU92 | 0.0 | A0A151TU92_CAJCA; Myb family transcription factor APL | ||||
| STRING | XP_007162313.1 | 0.0 | (Phaseolus vulgaris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3740 | 34 | 65 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06800.1 | 1e-70 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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