PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_09544
Common NameKK1_009812
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 347aa    MW: 37421.6 Da    PI: 8.7338
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_09544genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.91.2e-4262138177
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                    +CqvegC++dls+ak y++rhkvC +hsk+p v+v+ l+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ 
  C.cajan_09544  62 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPIVIVASLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPP 138
                    6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.7E-3456124IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.88160137IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-4061142IPR004333Transcription factor, SBP-box
PfamPF031101.1E-3163136IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MASASSESLN GLKFGKKIYF EDVGHSTSTP PSSLASAVAT TASSSSSRKG RGGSVQPAQP  60
PRCQVEGCKV DLSDAKAYYS RHKVCGMHSK SPIVIVASLQ QRFCQQCSRF HQLPEFDQGK  120
RSCRRRLAGH NERRRKPPPS SLLTSRYARL SSSAFDNSGR GGNFLMELSS YPKLSLRSPL  180
PTPGSSELAH GNQTSTISWQ ENSETPSDLF LQGSVGGTSF AGPEHPPGES YTGVTDSSCA  240
LSLLSSQTWG SRNTAPSLGL NSMINFNETP MTQLAASSHG ASIHQLPNNS WCFKGIDTEV  300
VPDLGLGQIS QPLNSQLPGE LDLSQQGRRH YVDLEQSRAY ESAHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30631361184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_09544
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-158AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211885.10.0squamosa promoter-binding-like protein 9
TrEMBLA0A151TU350.0A0A151TU35_CAJCA; Squamosa promoter-binding-like protein 9
STRINGGLYMA03G29901.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.17e-73squamosa promoter binding protein-like 9