PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_09314 | ||||||||
Common Name | KK1_009578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 279aa MW: 31630.9 Da PI: 9.1452 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.3e-20 | 123 | 176 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++tk+q +Le+ F+++++++ ++++eLAkkl+L rqV vWFqNrRa+ k C.cajan_09314 123 KKLRLTKQQSAILEDSFKQHSTLTPKQKQELAKKLNLRPRQVEVWFQNRRARTK 176 56789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 113.7 | 1.1e-36 | 122 | 209 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+k+q+++LE+sF+++++L+p++K+ela++L+l+prqv+vWFqnrRARtk+k++E+++e Lk+++++l+ee+++L+ke eeL+ C.cajan_09314 122 NKKLRLTKQQSAILEDSFKQHSTLTPKQKQELAKKLNLRPRQVEVWFQNRRARTKLKETEVECELLKKWCESLREEKKMLQKELEELK 209 59************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-18 | 116 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 118 | 178 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-17 | 120 | 182 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.75E-17 | 123 | 179 | No hit | No description |
Pfam | PF00046 | 2.5E-17 | 123 | 176 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-19 | 127 | 176 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 153 | 176 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.8E-10 | 178 | 224 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGFDISIPGL RLGLGLGLHD HDEHKQRRQR QKKKEADPCN KAYPSLTLGP PPDDDVEANN 60 NEPISKTESD EYYYFHPHAS SPSAVSSFSN SCIKRDRDQF AGEEVEKILS RVVDVHENGN 120 PNKKLRLTKQ QSAILEDSFK QHSTLTPKQK QELAKKLNLR PRQVEVWFQN RRARTKLKET 180 EVECELLKKW CESLREEKKM LQKELEELKL MKARVGVGPY YMQLPVASLT ICPSCDKIYG 240 GSGATKNGSS PTTPLLLGPK AHHSFYKSNY TFTQSSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 34 | RRQRQKKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_09314 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020210781.1 | 0.0 | homeobox-leucine zipper protein HOX15 | ||||
Swissprot | A2XE76 | 3e-54 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 3e-54 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | A0A151TTF7 | 0.0 | A0A151TTF7_CAJCA; Homeobox-leucine zipper protein HOX19 | ||||
STRING | GLYMA04G05200.2 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-45 | homeobox from Arabidopsis thaliana |