PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08856
Common NameKK1_009115
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 595aa    MW: 66553.8 Da    PI: 4.7413
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08856genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.81.1e-1382225922374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL+ecA a+s+g+ e+ ++++++l++++s +g+p qR+aay++e+Laarla+s++++ykal+++e +   ss++laa+++++ev+P++kf++++
  C.cajan_08856 222 KQLLYECAIALSEGNEEEGSSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFIA 314
                    589*****************************************************************9...9*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN+aI eav+ + ++HiiDfdi+qG Q+++L+q+LasR+++pp++R+Tgv++pes+  s   l+ +g+rL+k+Ae+lg+pfef++ va+r++ +++
  C.cajan_08856 315 ANNAITEAVKDDMKIHIIDFDINQGSQYINLIQTLASRSSKPPHVRLTGVDDPESVqrSVGGLKIIGQRLEKLAEALGLPFEFRA-VASRTSIVTP 409
                    ******************************************************9989999************************.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++L+++pgEal+Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+++lpres++r++vEr
  C.cajan_08856 410 SMLNCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRESQDRMNVER 505
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++l+r+ivnvvaceg++r+er e ++kWr+r+++aGF++ p+s++++++++ l++ ++ d y+++ee g+l +gW+d++L+++SaW+
  C.cajan_08856 506 QCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTSSPMSTNVTDEIRKLIKVMYCDRYKIKEEMGALHFGWEDKNLIVASAWK 592
                    **********************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.335195572IPR005202Transcription factor GRAS
PfamPF035143.8E-136222592IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MSLVRSADLA PTSYENAKLY SLKGTDVRPG LSSQIFGPDK HRSTYMTDTC SRESYEKYFH  60
DSQTEELIEP SSSSISGSSI HPDAASSYQL RASSGASMVA NNPFDTSSMS TRHHGGYRSN  120
FGSDLMENVS LDSRDNDGQM KLKLQALERA LLDDSDAEEE EEEEDIFEAT QSMEIDPDIA  180
EWADSMQNML LHDSPKEYSS SDSNISSISS TKETLQTFHN PKQLLYECAI ALSEGNEEEG  240
SSMINNLRQM VSIQGEPSQR IAAYMVEGLA ARLAESGKSI YKALRCKEPP SSDRLAAMQI  300
LFEVCPCFKF GFIAANNAIT EAVKDDMKIH IIDFDINQGS QYINLIQTLA SRSSKPPHVR  360
LTGVDDPESV QRSVGGLKII GQRLEKLAEA LGLPFEFRAV ASRTSIVTPS MLNCRPGEAL  420
VVNFAFQLHH MPDESVSTVN ERDQLLRLVK SLNPKLVTVV EQDVNTNTTP FLPRFVEAYN  480
YYSAVFESLD VTLPRESQDR MNVERQCLAR DIVNVVACEG EDRIERYEVA GKWRARMTMA  540
GFTSSPMSTN VTDEIRKLIK VMYCDRYKIK EEMGALHFGW EDKNLIVASA WKLPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-7122759524380Protein SCARECROW
5b3h_D6e-7122759524380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08856
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212491.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A151TS870.0A0A151TS87_CAJCA; Scarecrow-like protein 1
STRINGGLYMA06G12701.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]