PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08465
Common NameKK1_008713
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 373aa    MW: 41033.8 Da    PI: 8.7062
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08465genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.65.6e-41102178278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  C.cajan_08465 102 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQP 178
                    **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-3297163IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.68499176IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-38100181IPR004333Transcription factor, SBP-box
PfamPF031102.6E-30102175IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDWNLKAPSW DLVDVDNKAT LANMEKMEDQ QNRFGVYRMK GEFSVDLKLG QVGNSGTDSV  60
LGKSKDVVVA TGGGVSKVAS SPSSGSSKRA RAINNTSLTV SCLVDGCNSD LSNCRDYHRR  120
HKVCELHSKT PEVTIGGLKQ RFCQQCSRFH SLEQFDERKR SCRKRLDGHN RRRRKPQPEP  180
LTRPGSFLSN YQGTQLLPFS SPHVYPSTAM VSPSWSGGIV TSSAEARFYN QHHQVHHLVE  240
KQDLFLGSSH KEGKQVAFLH SNHQTPPPFP PASLLRTATT ATTTTPLTSN NSNSVHDSPC  300
ALSLLSSSQT HTHGNALNQM VQPPSMSLMQ PLGLSLQDNN SLESVNHCSS MYSLGSDGSQ  360
CNEAPQLSPF QWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-281021751184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157174RKRSCRKRLDGHNRRRRK
2157175RKRSCRKRLDGHNRRRRKP
3158175KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08465
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213579.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020213580.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020213582.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020213583.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A151TR380.0A0A151TR38_CAJCA; Squamosa promoter-binding-like protein 13
STRINGXP_007137898.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.15e-69SBP family protein