PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08170
Common NameKK1_008415
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TCP
Protein Properties Length: 234aa    MW: 25089.2 Da    PI: 10.5909
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08170genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.47.3e-40131962120
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                    a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a++++ + s+ s+s+++++         
  C.cajan_08170  13 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFSSVSLSVRSSSTDHKPqllaptpfi 108
                    78*******************************************************************777444444444444444677888899 PP

            TCP  89 ........................................................kaaksaakskksqksaasalnlakesrakara 120
                                                                            + a+ + +++++q+++++a+ +a+++r++++a
  C.cajan_08170 109 lgkrirtdedsskdeavsvgpslvgpstppglwalparpdfgqiwsfaaaapemvvQPAAVSVSQQQQQQQQQQASLFAHHHRQQQQA 196
                    999999999999999****************************************955555555666666666668888888877765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-3519184IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2091973IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSTSDATTNQ PLAVKKPPSK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE  60
WLLRQAEPSI IAATGTGTTP ATFSSVSLSV RSSSTDHKPQ LLAPTPFILG KRIRTDEDSS  120
KDEAVSVGPS LVGPSTPPGL WALPARPDFG QIWSFAAAAP EMVVQPAAVS VSQQQQQQQQ  180
QQASLFAHHH RQQQQAIGEA SAARVGNYLP GHLNLLASLS GGPGNSGRRD DEPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407981e-87AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047761e-87AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149581e-87AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-87CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212067.11e-169transcription factor TCP7
SwissprotQ9FMX22e-95TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A151TQB41e-168A0A151TQB4_CAJCA; Transcription factor TCP7
STRINGGLYMA10G43190.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-81TCP family protein