PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_08170 | ||||||||
Common Name | KK1_008415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 234aa MW: 25089.2 Da PI: 10.5909 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.4 | 7.3e-40 | 13 | 196 | 2 | 120 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a++++ + s+ s+s+++++ C.cajan_08170 13 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFSSVSLSVRSSSTDHKPqllaptpfi 108 78*******************************************************************777444444444444444677888899 PP TCP 89 ........................................................kaaksaakskksqksaasalnlakesrakara 120 + a+ + +++++q+++++a+ +a+++r++++a C.cajan_08170 109 lgkrirtdedsskdeavsvgpslvgpstppglwalparpdfgqiwsfaaaapemvvQPAAVSVSQQQQQQQQQQASLFAHHHRQQQQA 196 999999999999999****************************************955555555666666666668888888877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-35 | 19 | 184 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 19 | 73 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSTSDATTNQ PLAVKKPPSK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE 60 WLLRQAEPSI IAATGTGTTP ATFSSVSLSV RSSSTDHKPQ LLAPTPFILG KRIRTDEDSS 120 KDEAVSVGPS LVGPSTPPGL WALPARPDFG QIWSFAAAAP EMVVQPAAVS VSQQQQQQQQ 180 QQASLFAHHH RQQQQAIGEA SAARVGNYLP GHLNLLASLS GGPGNSGRRD DEPR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_08170 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240798 | 1e-87 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. | |||
GenBank | AP004776 | 1e-87 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. | |||
GenBank | AP014958 | 1e-87 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-87 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020212067.1 | 1e-169 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-95 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A151TQB4 | 1e-168 | A0A151TQB4_CAJCA; Transcription factor TCP7 | ||||
STRING | GLYMA10G43190.1 | 1e-136 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 4e-81 | TCP family protein |