PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_08004 | ||||||||
Common Name | KK1_008247 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C3H | ||||||||
Protein Properties | Length: 153aa MW: 15957.1 Da PI: 9.9229 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37 | 5.6e-12 | 120 | 144 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +G+rC+FaHg C.cajan_08004 120 FKTKLCENFAK-GSCTFGERCHFAHG 144 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54791 | 6.43E-16 | 16 | 97 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 2.3E-16 | 25 | 96 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.8E-11 | 25 | 95 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.984 | 26 | 90 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.4E-11 | 28 | 92 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 7.22E-13 | 30 | 91 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-17 | 115 | 151 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.83E-9 | 118 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-7 | 119 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.633 | 119 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 120 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MQSRRVGGRI EPPIPAHGAA GGFGASATAK ISINASLAGA VIGKNGVNSK QICRATGAKL 60 SIRDHDSDPN LRNIELEGSF DQIKQASAMV HELILNVSSA SGPPMKSITT QSSAAPSNNF 120 KTKLCENFAK GSCTFGERCH FAHGADELRK PGI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_08004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094371 | 1e-172 | BT094371.1 Soybean clone JCVI-FLGm-18H5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020236561.1 | 1e-106 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q69XQ3 | 7e-56 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A151U8A7 | 1e-107 | A0A151U8A7_CAJCA; Zinc finger CCCH domain-containing protein 44 | ||||
STRING | XP_004497409.1 | 1e-84 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-48 | C3H family protein |