PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_07944

Common Name

KK1_008181

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WOX

Protein Properties

Length: 275aa MW: 31082.8 Da PI: 6.7869

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_07944	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69	6e-22	86	146	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l +++e++V++WFqNrRa+ k+ C.cajan_07944 86 RQRWTPTPVQLQILERIFDQgNGTPSKEKIKEITAELgqhgQISETNVYNWFQNRRARSKR 146 89***************99************************************97 PP
2	Wus_type_Homeobox	102	4.1e-33	85	147	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtPtp Q++iLe+++++G tP+ke+i++itaeL ++G+i+++NV++WFQNr+aR+++k C.cajan_07944 85 SRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRK 147 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-18	80	149	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	82	147	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-19	84	148	IPR009057	Homeodomain-like
SMART	SM00389	8.8E-16	84	151	IPR001356	Homeobox domain
CDD	cd00086	6.20E-15	86	147	No hit	No description
Pfam	PF00046	8.8E-20	86	146	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MELQKQLQRW QQSSTDANGE LMYVKVMTDE QLETLRKQIA VYATICDQLI EMHRTLSAQQ 60 DLAGVRLGNI YCDPLMASGG HKITSRQRWT PTPVQLQILE RIFDQGNGTP SKEKIKEITA 120 ELGQHGQISE TNVYNWFQNR RARSKRKLQN VAPTNTESEV DTEVDSKDKK TKPEDFQSQL 180 NITTSSGGTQ KLCFQNHNPQ VYSDMHYLNT DSNNKPYSMF PSDATLKSTT NLTPMSVFNE 240 VLSNSRSEYV GGKMEVAGTV SYNLFHQAGD CNLTG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_07944

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-174	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206624.1	0.0	WUSCHEL-related homeobox 8 isoform X2
Swissprot	Q5QMM3	3e-85	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A151U858	0.0	A0A151U858_CAJCA; WUSCHEL-related homeobox 8
STRING	GLYMA20G23220.2	1e-170	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-83	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]