PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07808
Common NameKK1_008035
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HB-PHD
Protein Properties Length: 671aa    MW: 75043.2 Da    PI: 5.5456
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07808genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox437.6e-145375821156
                    HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++L + F++n+yp+++++e+LA +lgLt +qV+ WF N R   +
  C.cajan_07808 537 VVQRLHKSFKENQYPDRTTKERLALELGLTYQQVTKWFDNTRWSFR 582
                    6899**************************************8766 PP
2PHD37.45.8e-13203258151
                    SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
            PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                    +C+ C++    ++++++lCdg C++ fH+ Cl+++l +e++p +   wlC+ C++k
  C.cajan_07808 203 FCAKCQSkeLSTNNDIILCDGvCDRGFHQLCLDPPLLTEDIPPDdeGWLCPGCDCK 258
                    699***977777********77*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-13193261IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.6E-13200257IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.816201258IPR019787Zinc finger, PHD-finger
CDDcd155041.43E-28203255No hitNo description
PfamPF006281.8E-10203258IPR019787Zinc finger, PHD-finger
SMARTSM002495.0E-10203256IPR001965Zinc finger, PHD-type
PROSITE patternPS013590204255IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466891.11E-13521587IPR009057Homeodomain-like
SMARTSM003892.7E-12522588IPR001356Homeobox domain
PROSITE profilePS5007113.556524584IPR001356Homeobox domain
PfamPF000461.9E-11536582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-13538589IPR009057Homeodomain-like
CDDcd000863.88E-12538585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MQSSAAQLNA SSANELLDPP SGDVVNNISS NCSERMSISP THLQLRRRGK KNSKLLKKYM  60
LRSSDRALRS RTKEKPKEPE PSSNLVDGNN DGVKKKSGRK KKKKREEGIT DQYSRIRSHL  120
RYLLNRISYE KSLIDAYSGE GWKGYSMEKL KPEKELQRAK SEILRRKLKI RDLFRNLDSL  180
CAEGKLPESL FDSEGEIDSE DIFCAKCQSK ELSTNNDIIL CDGVCDRGFH QLCLDPPLLT  240
EDIPPDDEGW LCPGCDCKDD CMDLVNDSFG TNLCISDPWE RVFPEAAGNN MDNNLGLPSD  300
DSDDDDYNPN GPEDVNVEGN ESSSDESEYA SASEKLEGSH EDQYLGLPSE DSDDGDYDPE  360
APDVDCKVNE ESSSSDFTSD SEDLAAAIDD NTSPGQDGDI SASLDDVKYL KSSSKQKGKV  420
DSGQEGSSLV SGKRHVERLD YKKLYDETYH SDTSDDDDWT DTATPSRKKK LTSNVTPLSP  480
NGNAPNNSVH VPKRNAHQNK AENINNSPTK SRDGRVKSGS RNRKSGSSTH KRLGEAVVQR  540
LHKSFKENQY PDRTTKERLA LELGLTYQQV TKWFDNTRWS FRHSSQMETK SGRNASQQAT  600
DGRTENEERK CELMSPELSG EKSKTPSSRK RKHFSEPQAS EARLDINGSA TSSPNAHEIQ  660
TSNKMKTRKR K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14957KKNSKLLKK
298104RKKKKKR
398105RKKKKKRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07808
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:21951842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909550.0BT090955.1 Soybean clone JCVI-FLGm-5D8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020225178.10.0homeobox protein HAT3.1 isoform X2
SwissprotQ8H9911e-134HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBLA0A151U7Q20.0A0A151U7Q2_CAJCA; Homeobox protein HAT3.1
STRINGGLYMA10G40641.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-96Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW
    Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.
    J Integr Plant Biol, 2011. 53(11): p. 869-78
    [PMID:21951842]