PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07559
Common NameKK1_007765
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 719aa    MW: 79219.9 Da    PI: 5.8604
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07559genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.4e-2056111156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    r++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R++ k
  C.cajan_07559  56 RKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSQELGLEPMQIKFWFQNKRTQVK 111
                    789999**********************************************9877 PP
2START193.31.2e-602434602206
                    HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
          START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                    la+ a++e+ ++al++ep+Wv  s   e++n++e+ ++f+++ +    +++ea+r s+vv+m +a+ ve l+d+  qW + +     +a tlev+s
  C.cajan_07559 243 LALMAMDEVTRLALSAEPLWVAGSygtEILNEEEYQRTFPRAIGqnlgFKTEASRQSAVVIMSHARIVEMLMDVD-QWANVFCgivtRAVTLEVLS 337
                    78889*****************999****************99999*****************************.******99999********* PP

                    TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
          START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                    +g      galq+m ae+q+++plvp R+ +fvRy++++++++wv+vd S+d+ ++      v  ++++pSg++i++++ng+skv+wvehv+++gr
  C.cajan_07559 338 TGiagsynGALQVMAAEFQVPTPLVPtREHYFVRYCKKHSDESWVVVDLSLDHLRPGA----VRGCQRRPSGCIIQELPNGYSKVIWVEHVEVDGR 429
                    ********************************************************97....577999**************************** PP

                    XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                     +h l++++v+s+la+ga +wva l+rqce+
  C.cajan_07559 430 EVHDLYKHFVNSCLAFGATRWVASLDRQCER 460
                    *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1941113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-2142111IPR009057Homeodomain-like
PROSITE profilePS5007116.97353113IPR001356Homeobox domain
SMARTSM003891.4E-1854117IPR001356Homeobox domain
CDDcd000861.50E-1855114No hitNo description
PfamPF000461.4E-1756111IPR001356Homeobox domain
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PROSITE profilePS5084841.511233463IPR002913START domain
SuperFamilySSF559616.04E-33233462No hitNo description
CDDcd088757.59E-106237459No hitNo description
SMARTSM002349.0E-56242460IPR002913START domain
PfamPF018521.0E-51243460IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-7297458IPR023393START-like domain
SuperFamilySSF559617.51E-22479707No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MYHSQNAFNP QQGLLNMTSS ENDPLGRNRD DISNDIDTME APPSGDDQDL DQAARRKRYH  60
RHTQHQIQEM ESFFKECPHP DDKQRKELSQ ELGLEPMQIK FWFQNKRTQV KTQHERHENN  120
LLKSENEKLR ADNIRYKELL RNATCPTCGG PAAVGEMSFD EQELRLENAR LREEIDRVSA  180
IATKFSPKSP GSYYNMPSRS LDLGVGGNYG AQPGMVGEMY DGNDPFRAFP LPTDADKLMI  240
VELALMAMDE VTRLALSAEP LWVAGSYGTE ILNEEEYQRT FPRAIGQNLG FKTEASRQSA  300
VVIMSHARIV EMLMDVDQWA NVFCGIVTRA VTLEVLSTGI AGSYNGALQV MAAEFQVPTP  360
LVPTREHYFV RYCKKHSDES WVVVDLSLDH LRPGAVRGCQ RRPSGCIIQE LPNGYSKVIW  420
VEHVEVDGRE VHDLYKHFVN SCLAFGATRW VASLDRQCER FASVNATNIP AGDLCVVIGR  480
KSMLNLAERM MLSFCNGVGA STAHVWTPLT IGGEDLRVMT RKSVNDPGRP PGIVLSAATS  540
LWLPVPPTRV FHFLRDEKAR NRWDILSNGA IVEEVAHIGN GRDPGNSVSL LRVNSSNTTQ  600
SNMIILQECW SDAAGSYVVY APVDIVAMNL VLGGGNPDYV ALLPSGFAVL PDGSGMKNGP  660
GPIIETGSGG CLLTVAFQIL VDSAPTAKLS IGSVTTVSNL IKCTVDRITA AVTGAAAPN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07559
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210648.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_029126488.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A151U7220.0A0A151U722_CAJCA; Homeobox-leucine zipper protein MERISTEM L1
STRINGEOY286240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]