PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07476
Common NameKK1_007681
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 328aa    MW: 38364.1 Da    PI: 5.3334
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07476genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.7e-35411332103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y+i++d+++++++sws+ +nsf+v+d++ f+  +Lpk+Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +gkk ll++i
  C.cajan_07476  41 FLTKTYDIVDDPSTNHIVSWSKGNNSFIVWDPQAFSIALLPKFFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANELFLRGKKILLKSI 127
                    9****************************************************************999.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r+k +
  C.cajan_07476 128 RRRKAN 133
                    ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3734124IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5637130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-3437130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-194164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3041130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MNPHGRVKEE FLGESSSFDQ KPFMVVPQPI EGLHETGPPP FLTKTYDIVD DPSTNHIVSW  60
SKGNNSFIVW DPQAFSIALL PKFFKHNNFS SFVRQLNTYG FKKVDPDRWE FANELFLRGK  120
KILLKSIRRR KANHQSQAMQ QDDVESCVEV GQFGLDEEVD RLRRDRQVLM VELVKLRQQQ  180
QNTRAHLQAM EGRLKRTEQK QQQMMNFLAR AMQNPNFVQQ LVQQTEWRKE LEEAFSKKRR  240
RPIEQGPSDV VEVEFEVPDL DFYSLNLEES SGSQKRTEED HIQLESRDND IDEVFWQDLL  300
NEGIKHQSVE DVDVLAEQLG YLASSPNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-233213017129Heat shock factor protein 1
5d5v_B2e-233213017129Heat shock factor protein 1
5d5v_D2e-233213017129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07476
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-130AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020236147.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-122HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A151U6N70.0A0A151U6N7_CAJCA; Heat stress transcription factor A-6b
STRINGGLYMA20G28870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-103heat shock transcription factor A6B