PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_07427 | ||||||||
Common Name | KK1_007634 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26437.5 Da PI: 9.1185 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.3 | 5.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri nk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl+ yss C.cajan_07427 9 ERIHNKINRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSS 59 69***********************************************96 PP | |||||||
2 | K-box | 65.7 | 1.6e-22 | 100 | 182 | 15 | 97 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 l+qel L++++e+Lqr+qR+l Ge+Le+Ls+keL++Le+qL++ l + R++ ++ l++ i+el k ++l++ nk+L++k C.cajan_07427 100 HCLYQELLILRSKYESLQRTQRNLTGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLTSRIDELHGKVHNLEQVNKQLESK 182 5689****************************************************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.258 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.98E-39 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-31 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.617 | 99 | 193 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.4E-20 | 101 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGRGKVVLER IHNKINRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSS RGKLFQYSST 60 DISRIIEKYR QCCFDMSQTG DIAEHRSQQR FIISNNCALH CLYQELLILR SKYESLQRTQ 120 RNLTGEELEP LSMKELHSLE KQLDRTLAQA RKHLTQKLTS RIDELHGKVH NLEQVNKQLE 180 SKERGKCTQI CESSANNDIW LHDAHVNQFE YGTTRCVLLF TLVLLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-24 | 1 | 71 | 1 | 71 | MEF2C |
5f28_B | 4e-24 | 1 | 71 | 1 | 71 | MEF2C |
5f28_C | 4e-24 | 1 | 71 | 1 | 71 | MEF2C |
5f28_D | 4e-24 | 1 | 71 | 1 | 71 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_07427 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098753 | 1e-87 | BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237632.1 | 1e-141 | MADS-box transcription factor 17 isoform X1 | ||||
Swissprot | Q7XUN2 | 1e-60 | MAD17_ORYSJ; MADS-box transcription factor 17 | ||||
TrEMBL | A0A151U6J4 | 1e-165 | A0A151U6J4_CAJCA; MADS-box transcription factor 17 | ||||
STRING | GLYMA20G29250.1 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13223 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-54 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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