PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_07419 | ||||||||
Common Name | KK1_007623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 236aa MW: 24900.9 Da PI: 10.4535 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121 | 1.3e-37 | 4 | 104 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaaks 97 a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++ ++ + +ss+++ + +++++ C.cajan_07419 4 AAAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTIPAIAV-SVGGALKIPTSSAARPEGEDTPR 98 6799************************************************************99999555.22222222222222222222222 PP TCP 98 kksqksaa 105 k++++ a C.cajan_07419 99 KRRRR--A 104 22222..2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.512 | 10 | 64 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.5E-30 | 10 | 94 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSTAAAKRPS KDRHTKVEGR GRRIRMPATC AARIFQLTRE LGHKSDGETI RWLLEHAEPA 60 IIEATGTGTI PAIAVSVGGA LKIPTSSAAR PEGEDTPRKR RRRASNSEFI DVNESQVSVS 120 SGLAPIAQTA YGGGSGGGGL VPVWHGSNAS GPFFMFPNSS NPPQYWAIPA SATPFFNVQA 180 RPISVSVTSA ASASTSTSGS SSSAATTTQM LRDFSLEIYD KKELQFLGQP PPSSKE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 101 | RKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00064 | PBM | Transfer from AT5G51910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_07419 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020208401.1 | 1e-141 | transcription factor TCP19 | ||||
Swissprot | Q9LT89 | 5e-79 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | A0A151U6N1 | 1e-170 | A0A151U6N1_CAJCA; Transcription factor TCP19 | ||||
STRING | GLYMA20G29330.3 | 1e-133 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 6e-73 | TCP family protein |