PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07256
Common NameKK1_007459
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 566aa    MW: 61944.5 Da    PI: 6.9859
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07256genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.91.9e-8626856574373
           GRAS  74 sseelaalklfsevsPilkfshltaNqaIleav.ege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetger 164
                    s e++a+++l++e s ++k++ ++aN aIle++ + +    r+ ++Dfdi++G Q+++Ll++L++R++g+p ++RiT++g+  s+  e+l+++ge 
  C.cajan_07256 268 SREHAASTQLLFEHSLFFKVALMVANIAILESAfDDKaenARLCVVDFDIGNGNQYASLLHELSARRKGAPaTVRITALGD--SDADERLKAVGEV 361
                    56889999**********************9752444666999*********************99977666*********..5699********* PP

           GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                    L + Ae+lgv fef+v+v+ +l++l+ e+L ++p+E laVn++++l+++ desvs e++rd++L+ vk l P+vv++veqea+ n++ F++r++e+
  C.cajan_07256 362 LGRHAERLGVGFEFKVVVSPKLDELTRESLGCDPDEPLAVNFAFKLFKMADESVSPENPRDALLRRVKALAPRVVTLVEQEANANTAAFVARVAES 457
                    ****************9999**************************************************************************** PP

           GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                    + yy alf+sle+++   ++er+ +E+  l+r++ n vaceg+er+er+e ++kWr+r+++aGF+  pls+++a+++k+ l   +++  +v+ e+g
  C.cajan_07256 458 CAYYGALFESLESTM---ESERVRIEEG-LSRKVANSVACEGRERVERCEVFGKWRARMSMAGFRLKPLSQRVAESIKARLLAAGNR-VSVKVENG 548
                    **************6...99********.***************************************************9999966.9******* PP

           GRAS 357 slvlgWkdrpLvsvSaW 373
                     + +gW++r+L+++SaW
  C.cajan_07256 549 GISFGWMGRTLTVASAW 565
                    ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.321178547IPR005202Transcription factor GRAS
PfamPF035146.6E-84268565IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MSSPGFPNGG PSDFYGGPAG FPRRSMALQP TNTTHHPLYR TQPSQILLDP SSHIAQTQTP  60
NFIRKRTLAE IQTLITNTNN NNNNNSSNNL NPLLSNYLLR SVKPRTFQHV DFSSRAQFHH  120
LPPNAVNSQT QYSILPNPNA NFPPVHTRLT APQEPDKNSI DHRLQLQELE KQLLEDNDDE  180
NGDAVSVITN SEWSDTIQNL ITPHKPASPS STSSTTSSNS STTSSNTSSI CFKQSLTEAA  240
SAISEAKFDA ATEILNRLSQ VSTAGCGSRE HAASTQLLFE HSLFFKVALM VANIAILESA  300
FDDKAENARL CVVDFDIGNG NQYASLLHEL SARRKGAPAT VRITALGDSD ADERLKAVGE  360
VLGRHAERLG VGFEFKVVVS PKLDELTRES LGCDPDEPLA VNFAFKLFKM ADESVSPENP  420
RDALLRRVKA LAPRVVTLVE QEANANTAAF VARVAESCAY YGALFESLES TMESERVRIE  480
EGLSRKVANS VACEGRERVE RCEVFGKWRA RMSMAGFRLK PLSQRVAESI KARLLAAGNR  540
VSVKVENGGI SFGWMGRTLT VASAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3328456589374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07256
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020236399.10.0LOW QUALITY PROTEIN: scarecrow-like protein 8
SwissprotQ9FYR71e-130SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A151U6730.0A0A151U673_CAJCA; Scarecrow-like protein 8
STRINGXP_007143458.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-116SCARECROW-like 8