PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_07243 | ||||||||
Common Name | KK1_007445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23632.2 Da PI: 6.8668 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.3 | 1.1e-42 | 64 | 163 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la+ C.cajan_07243 64 PCAACKILRRRCVEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAK 159 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e C.cajan_07243 160 AQAE 163 9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.945 | 63 | 164 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.0E-43 | 64 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEYKVKTTTT SPPIPIHVPT MLSNSPPSSS SSPPSQSHTP FPSPSQGSPP AAPPSPPPPV 60 VVSPCAACKI LRRRCVEKCV LAPYFPPTDP IKFTIAHRVF GASNIIKFLQ ELPESQRADA 120 VSSMVYEANA RIRDPVYGCA GAICQLQKQV SELQAQLAKA QAEVVNMQCQ QANLVALICM 180 EMSQSQDQNM LQPQPHVDMS CFIEDNTFGT AWEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-43 | 55 | 171 | 2 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-43 | 55 | 171 | 2 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_07243 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099113 | 0.0 | BT099113.1 Soybean clone JCVI-FLGm-13B15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020208327.1 | 1e-158 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-76 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A151U637 | 1e-157 | A0A151U637_CAJCA; LOB domain-containing protein 1 | ||||
STRING | GLYMA20G31780.1 | 1e-116 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 8e-65 | LOB domain-containing protein 1 |